Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0582 ATGGGAATATCCACTTCCATTTCGTTTGTAATTCTGGTCCTCTATGTAGCCACCGGCTATGCCTTTTTCCTGCCTCGTGTTGCTGCTGGTGCTGCTTTCACTACAAAAACGCCAGCGTCTAATTCGTTGTCATCAATAGATGAAGAAGCAAATGCTTTACTTTGGAGTCACTGGTGGAGTCACAAAAATACATCAGACCGCTGCAATTGGCCTGGTATCGTGTGCAATGAAGCTGGAAGCATCACTGAGATTTCAAATCCAGTGATGAACAATTCTCAGGAAGGATTATGGTTTTGGGACATCAACATCACAGCCTTCACAAATTTAGTTCGTCTAGATCTCAGTGCAATGGGGCTGTGGGCAAGATTCCCGAAGGGCATTACTGCTCTCAAGGATCTCATTTATCTCAATCTTTCTTATAACCATCTTTCAGGTGAGATACCCACTACAATTGCAAACCTCACTCAACTTGTTGTATTTGATATTTCTTACAATTCCATGAGTGGTGAAGTTCCACGTGAATTAGGCATTTTGAGCAAACTTGTTACACTTGATTTTAGTGTTAACAACTTCAGTGGATCCATTCCTTCAAGCTTATGTCATATGAGCAGTCTCACTCATATGAATCTATCCTCTAACCAGCTTACTGGTGAGCTTCCTATCACACTTGCAAAGCTTTCTCAACTTGTGGTCCTTGATACTTCTTCTAATTCCATTGGTGCTGTGATTCCTCCTGAATTTGGAAATTTGAAGAATCTTGTCACTTTAGATTTGAGTGACAACAGGTTTAATGGATCTATCCCTTCAAGTTTGGGCCTTATGAGCAGTCTCTTGCATTTGTTTCTGCACAAGACTTCAGTCTCTGGTAAGATACCTTCTTGTATAGGAAACCTCATCCAGTTAGTGAATTTGAAGCTTTCCCATAATCAAATCTTTGGTTTCATCCCTCCAGAAATAGGCAAGTTAACAAGCCTAGTTACCTTAGATCTTGGTTACAATATGCTCATTGGTGCTATTCCTATGGAGATAGGGAACTTGAAGAACTTGACTTACTTAAGCCTGAGTGGCAATGAGCTAAGTGGTCAAATTCCAAGCACTGTAGGCTACCTGAAAGGTTTGAGGGCTCTCCTTCTTGATTCAAACAAGATTATTGGTTCAATACCATCAGTGTTATGGGATTTAAGAAGTTTGACAAGTTTGACCTTGTTAAACCTTTCACATAACACTCTAAGTGGCTCAATCCCATTCAATATAGGACTTTTAGCCCATTTGGAGCAGCTTTCAATCAGTAATAACCAAATCGAAGGGATTGCCAAAGCTTTGGCTTACTTGCATCATGACTGTATCTCACCAATCATTCATCGAGACATAACGAGTGGAAATATTTTGTTGAACTCAGAGTTGGAGGCTTTTGTCTCAGACTTTGGCACAGCTAGAGTCCTCAATCCTGATTCTTCCAGTCAAACTCTATTAGTTGGAACCTATGGATATATTGCCCCAGAACTGGCCTACACCTTGACTGTGACAACAAAGTGTGATGTCTATAGTTTTGGAGTAGTGGCATTAGAAACAATGATGGGGAAGCATCCGGCAGAGTTGATATCGTCTTTATCAAAGTCATGGACTCAAAGCATGAAGCTGAAAGACGTCTTGGACTCCCGTTTGCCTTTTCCTTTCTTTCGGAAAGATGTTCAAGATGTTGTGCTTATTTTCACACACGCATTAGCTTGTGTGCATCGCAAACCACAGCTCCGCCCATCTATGCAACAAGTGGCTAAGGAATTCGCGGTTTCTTGCAGCCCACCATTGCCTTTGTCCGTTTGTGATGTCTCAATTCACCAATTGATGAATCAAGAAATCTATCTTACAAACAAGAAATATTGA 1884 0.4098 MGISTSISFVILVLYVATGYAFFLPRVAAGAAFTTKTPASNSLSSIDEEANALLWSHWWSHKNTSDRCNWPGIVCNEAGSITEISNPVMNNSQEGLWFWDINITAFTNLVRLDLSAMGLWARFPKGITALKDLIYLNLSYNHLSGEIPTTIANLTQLVVFDISYNSMSGEVPRELGILSKLVTLDFSVNNFSGSIPSSLCHMSSLTHMNLSSNQLTGELPITLAKLSQLVVLDTSSNSIGAVIPPEFGNLKNLVTLDLSDNRFNGSIPSSLGLMSSLLHLFLHKTSVSGKIPSCIGNLIQLVNLKLSHNQIFGFIPPEIGKLTSLVTLDLGYNMLIGAIPMEIGNLKNLTYLSLSGNELSGQIPSTVGYLKGLRALLLDSNKIIGSIPSVLWDLRSLTSLTLLNLSHNTLSGSIPFNIGLLAHLEQLSISNNQIEGIAKALAYLHHDCISPIIHRDITSGNILLNSELEAFVSDFGTARVLNPDSSSQTLLVGTYGYIAPELAYTLTVTTKCDVYSFGVVALETMMGKHPAELISSLSKSWTQSMKLKDVLDSRLPFPFFRKDVQDVVLIFTHALACVHRKPQLRPSMQQVAKEFAVSCSPPLPLSVCDVSIHQLMNQEIYLTNKKY 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0582 627 Gene3D Ribonuclease Inhibitor 87 278 IPR032675 -
Dere08g0582 627 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 213 447 - -
Dere08g0582 627 SUPERFAMILY Protein kinase-like (PK-like) 434 593 IPR011009 -
Dere08g0582 627 ProSitePatterns Tyrosine protein kinases specific active-site signature. 452 464 IPR008266 GO:0004672|GO:0006468
Dere08g0582 627 ProSiteProfiles Protein kinase domain profile. 256 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0582 627 Gene3D Ribonuclease Inhibitor 279 391 IPR032675 -
Dere08g0582 627 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 436 595 - -
Dere08g0582 627 SMART LRR_typ_2 346 370 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 130 154 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 298 322 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 421 444 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 226 249 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 397 420 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 202 225 IPR003591 -
Dere08g0582 627 SMART LRR_typ_2 250 274 IPR003591 -
Dere08g0582 627 FunFam Nuclear pore complex protein NUP107 39 197 - -
Dere08g0582 627 Gene3D Transferase(Phosphotransferase) domain 1 423 600 - -
Dere08g0582 627 SUPERFAMILY L domain-like 67 439 - -
Dere08g0582 627 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Dere08g0582 627 PRINTS Leucine-rich repeat signature 397 410 - -
Dere08g0582 627 PRINTS Leucine-rich repeat signature 253 266 - -
Dere08g0582 627 Pfam Protein kinase domain 432 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0582 627 ProSiteProfiles Leucine-rich repeat profile. 252 274 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0582 Dere-ChrDere08 8848364 8851666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0582 6 445 Receptor kinase-like Gene Family AT2G15080 33.114 9.35e-60 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere08g0582 Pkinase 1.1e-23 CL0016