Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0578 ATGGCATCACCGGACCGAGGACCAACAGGCGCCATAGACGGAACTCACGGAGGTTGGTGGAGCGAAGGAGCGGAGGAGTATGACAGTTACGATCTGCTTGTGCAACAGCAACCCCCGTCTTTCCATCTCAAACGAAGTTTGGAAATTCTCTTCGGTTTCGTTCCTCTAAATCTTCTGTGCAAGATGCAAATCTTTGTGAAAACCTTAACCGGCAAGACCATCACCCTTGAGGTGGAAAGTTCCGATACCATAGACAATGTCAAAGCTAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGACGAACCCTTGCTGACTACAATATCCAGAAGGAGTCGACTCTCCACCTTGTACTTCGTCTCAGGGGTGGGATGCAGATTTTTGTGAAGACTCTAACCGGCAAGACCATTACTCTTGAGGTTGAGAGCTCCGACACAATCGATAATGTAAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGACCAGCAAAGACTCATCTTTGCCGGTAAACAACTCGAGGATGGTCGCACCCTTGCTGATTACAACATCCAGAAGGAATCGACTCTCCACCTTGTGCTTCGTCTCAGGGGTGGCATGCAAATTTTCGTCAAGACGTTAACTGGGAAGACCATAACTTTGGAAGTTGAAAGTTCTGATACAATTGATAATGTAAAGGCTAAGATACAGGACAAGGAGGGCATACCACCTGATCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACTCTTGCTGATTATAACATTCAAAAGGAATCCACTTTGCACTTGGTATTGCGACTTCGTGGTGGTATGCAAATTTTTGTTAAGACTCTGACGGGGAAGACAATAACCTTGGAAGTGGAAAGTTCTGATACTATTGATAATGTGAAAGCTAAGATACAGGACAAGGAGGGTATCCCGCCTGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAAGATGGACGTACCCTTGCTGATTATAACATTCAAAAGGAATCAACGCTGCACCTGGTTTTGCGACTTCGCGGGGGTATGCAAATTTTTGTGAAAACTCTGACTGGGAAGACTATTACATTGGAGGTTGAAAGTTCGGATACTATTGATAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCCCCAGATCAACAGCGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGAAGGAATCTACTCTCCATCTTGTACTCCGCCTTCGCGGTGGCTGCTAAGCCTTGTCCTTGTGTCCTGTGCGTCTGTTTTGTGGCTCTGTAG 1347 0.4684 MASPDRGPTGAIDGTHGGWWSEGAEEYDSYDLLVQQQPPSFHLKRSLEILFGFVPLNLLCKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRRNLLSILYSAFAVAAKPCPCVLCVCFVAL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0578 448 FunFam Polyubiquitin 3 290 365 - -
Dere08g0578 448 FunFam Polyubiquitin 3 62 137 - -
Dere08g0578 448 SMART ubq_7 62 133 IPR000626 GO:0005515
Dere08g0578 448 SMART ubq_7 366 429 IPR000626 GO:0005515
Dere08g0578 448 SMART ubq_7 138 209 IPR000626 GO:0005515
Dere08g0578 448 SMART ubq_7 214 285 IPR000626 GO:0005515
Dere08g0578 448 SMART ubq_7 290 361 IPR000626 GO:0005515
Dere08g0578 448 PANTHER UBIQUITIN 290 369 - -
Dere08g0578 448 ProSitePatterns Ubiquitin domain signature. 240 265 IPR019954 -
Dere08g0578 448 FunFam Polyubiquitin-C 366 424 - -
Dere08g0578 448 CDD Ubl_ubiquitin 214 289 - -
Dere08g0578 448 PRINTS Ubiquitin signature 93 113 IPR019956 -
Dere08g0578 448 PRINTS Ubiquitin signature 72 92 IPR019956 -
Dere08g0578 448 PRINTS Ubiquitin signature 114 135 IPR019956 -
Dere08g0578 448 FunFam Polyubiquitin 3 138 213 - -
Dere08g0578 448 FunFam Polyubiquitin 3 214 289 - -
Dere08g0578 448 ProSitePatterns Ubiquitin domain signature. 88 113 IPR019954 -
Dere08g0578 448 CDD Ubl_ubiquitin 62 137 - -
Dere08g0578 448 SUPERFAMILY Ubiquitin-like 137 213 IPR029071 -
Dere08g0578 448 SUPERFAMILY Ubiquitin-like 212 289 IPR029071 -
Dere08g0578 448 ProSiteProfiles Ubiquitin domain profile. 62 137 IPR000626 GO:0005515
Dere08g0578 448 ProSitePatterns Ubiquitin domain signature. 164 189 IPR019954 -
Dere08g0578 448 Gene3D - 366 416 - -
Dere08g0578 448 SUPERFAMILY Ubiquitin-like 365 419 IPR029071 -
Dere08g0578 448 ProSiteProfiles Ubiquitin domain profile. 138 213 IPR000626 GO:0005515
Dere08g0578 448 ProSiteProfiles Ubiquitin domain profile. 290 365 IPR000626 GO:0005515
Dere08g0578 448 ProSiteProfiles Ubiquitin domain profile. 214 289 IPR000626 GO:0005515
Dere08g0578 448 Gene3D - 290 365 - -
Dere08g0578 448 Gene3D - 214 289 - -
Dere08g0578 448 Gene3D - 139 213 - -
Dere08g0578 448 Gene3D - 59 138 - -
Dere08g0578 448 ProSitePatterns Ubiquitin domain signature. 316 341 IPR019954 -
Dere08g0578 448 ProSiteProfiles Ubiquitin domain profile. 366 419 IPR000626 GO:0005515
Dere08g0578 448 SUPERFAMILY Ubiquitin-like 289 365 IPR029071 -
Dere08g0578 448 CDD Ubl_ubiquitin 138 213 - -
Dere08g0578 448 SUPERFAMILY Ubiquitin-like 61 137 IPR029071 -
Dere08g0578 448 CDD Ubl_ubiquitin 290 365 - -
Dere08g0578 448 ProSitePatterns Ubiquitin domain signature. 392 417 IPR019954 -
Dere08g0578 448 Pfam Ubiquitin family 140 211 IPR000626 GO:0005515
Dere08g0578 448 Pfam Ubiquitin family 292 363 IPR000626 GO:0005515
Dere08g0578 448 Pfam Ubiquitin family 368 419 IPR000626 GO:0005515
Dere08g0578 448 Pfam Ubiquitin family 64 135 IPR000626 GO:0005515
Dere08g0578 448 Pfam Ubiquitin family 216 287 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0578 Dere-ChrDere08 8828768 8831849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0578 366 419 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 9.29e-30 110