Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0573 ATGGGAAACAAAGGCATGTTTCGATATGCAGATGGGGTGGACAAGTTGTTGATCCTGTTTGGGACGCTGGGTAGTCTGGGAGATGGGCTTCAAACTCCTCTCACCATGTTCATTCTGAGCGATGTGATTAATGCCTATGGAGACCCCAATAGTGTTTTGACAAAACAAGATGTAAACAAGTATGCTTTAAGGATTTTCCTTGCTGCAATTGGAGTCGGACTTTTAGCTTTTGTTGAAGGAACATGTTGGACAAGAACTGCCGAGAGGCAGACTTCCAAAATGAAAATGGAATATCTGAAATCAGTACTTCGACAAGAAGTTGGTTTCTTTGACACCCAGGCTGCTGGTTCTTCAACAACCTACCAAGTTGTCTCACTCATCACTGTCGATGCCAATGCAATCCAAGATGCTTTAAGTGAAAAGATACCCAACTTCCTGGCTCACTTTTCGACATTTTTATTCTGTCACATCTTTGCATTCGTACTATCATGGAGGCTTACATTGGCAGCCATACCACTCTCAGTCATGTTCATCGTTCCAGCACTTGTATTCGGGAAGTTCATGTTGGATCTAGCAATGAAAATGATTGAATCTTATGGGGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACTGTTTATTCATATGTAGGGGAGAATCAGACACTGAATAGATTTAGCAGTGCACTTGAGAAAACCATGGAATTGGGAATAAAGCAAGGTTTTGCAAAGGGGTTGATGTTAGGAAGCCTAGGAGTTATATACATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACCTTTTTGATCACTGAGAAAGGTGAACAGGGTGGCCATGTATTTGTAGCCGGCTTCAACGTCCTCATGGGAGGCCTGAGTGTTTTGAGTGCACTTCCACATTTAACTGGTATCACAGAGGCATCAGCTGCTGTCACCCGCCTTTTTGAAATGATTGACAGGACGCCAACTATAGATTCTGAAGACAAAAAGGGAAAAGCTTTATCATATGTGAGAGGAGAAATTGAATTTCAAGATGTCTACTTTTGTTACCCATCTAGGCCAGATACACCAGTATTACAAGGACTCAATCTTACAATTCCAGCAGGCAAGAGAGTAGGCCTTGTAGGGGGTAGTGGTTCGGGCAAGTCCACTATCGTCGCATTGCTTGAGAGATTTTATGACCCTGCTGAGGGGGAAATACTCTTGGATGGCCACAAGATCAATAGACTTCAGTTGAAATGGCTGAGATCTCAACTGGGGCTAGTAAATCAAGAACCTGTACTTTTTGCCACATCCATAAAGGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATTGAAAGTGTGATAACTGCGGCTAAAGCAGCAAATGCACATGATTTCATCGTCAAGTTACCAGATGGATATGAAACCCAAGTTGGCCAGTTTGGATTTCAATTGTCTGGAGGGCAAAAGCAGCGAATTGCCATAGCCAGAGCTTTACTTAGGGATCCAAAGGTTCTGCTGCTTGATGAAGCTACTAGTGCCCTGGATGCACAATCTGAAAGAGTGGTGCAAGCAGCAATTGATCAAGCTTCGAAAGGAAGGACTACAATCATCATAGCTCATCGTCTGTCTACAATACAAACTGCTCACATGATTGCAGTTCTTCAGAGTGGCAGAGTCATCGAATCAGGTACTCATAATGAGCTCATGGAAATGAATAGTGGACAAGGTGAATATGCAAGGATGGTAGAGTTGCAGCAAATAACAACACAGAATGCAGAATCCAGAAATTACAATCTTCAAACAGAGGGAAGGAATCTCCACCACAGGATGAGCATTCCACCAAGCCCAGCAAGTATCAGATCAAGCACACAAGGCACTCCAATGTTACATCCCTTTAGCCAGGCATTTTCCATGGGAACACCCTACTCCTACTCAATTCAGTATGACGCTGATGATGATAGTTATGAAGATAACTTGAAAAGATCAACTTATCCAGCTCCTTCCCAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGTAAGTGCATTGCTTGGATGCTTGGGCGCAATAGGCTCCGGAGCAGTACAACCAGTAAATGCTTACTGCGTAGGAACACTTATATCAGTTTATTTTGACACAGAAAACTCTAAGATCAAGTCCAAAACTAGAGTCCTGGCTCTTGTTTTCTTGGGAATTGGTGTTTTTAACTTCCTTACGAGTATTCTCCAACACTATAATTTTGCAGTGATGGGAGAAAGATTGACTAAAAGAGTACGAGAAAAACTACTAGGAAAGTTGATGACTTTCGAGATAGGGTGGTTTGATGATGATGAGAACACAAGTGCAGCCATTTGTGCAAGATTAGCCTCTGAAGCTAACATGGTTCGCTCCCTTGTTGGGGATCGTATGTCATTGTTGGCCCAAGCAATTTTTGGGTCTGTCTTTGCTTATGCACTTGGATTGGTGCTTACATGGAGGTTATCCCTTGTGATGATTGCTGTACAACCATTAGTCATTGGAAGCTTTTATTCAAAAAGTGTCTTGATGAAGAGTATGGCAGAAAAAGCCCGGAAAGCACAAAAGGAAGGAAGCCAACTTGCAAGTGAAGCAGTAATAAACCATAGAACCATAACTGCCTTCAGTTCTCACAAAAGAATGTTAGCCCTTTTCAAATCTACATTGATAGGTCCTAAAAAGGAGAGTGTCAGGCAATCATGGATTTCAGGCTTTGGTCTTTTCAGCTCACAATTTTTGAACACTGCATCAACAGCTTTAGCTTACTGGTATGGTGGGAGGCTATTGATTGAGGGACTCATAGAACCAAAGCATCTTTTTCAAGCATTTTTGATATTGCTCTTCACTGCATATATTATTGCAGAAGCCGGAAGCATGACTTCGGACTTATCAAAAGGAAGCAGTGCAATTCGATCGGTGTTTGCTATCTTGGACAGAAAAAGTGAGATTGATCCCGACAGCACATGGTCAGTAGACATTAGGAAGAAAATAAGGGGTCGAGTGGAACTTAAAAGTGTTTTCTTCGCATATCCAACTAGACCTGAGCAAATGATTTTCAAGGGTCTGTGTCTTAAAGTTGAGGCAGGGAGAACAGTAGCATTGGTGGGACCAAGTGGTTGTGGTAAATCAACTATTATTGGTCTCATTGAAAGGTTTTACGAACCAGTGAAAGGAACAGTATGTATAGATGAACAGGACATCAAGTCCCATAACCTGAGACTGCTAAGGTCACATATTGCCCTTGTAAGTCAGGAGCCAACCCTTTTTGCTGGAACCATTCGAGAAAACATTGCCTATGGGAAAGAAAATGCAAGCGAAACTGAGATAAGAAAAGCTGCAGCTCGGGCTAATGCTCATGAATTTATAAGTGGAATGAACGATGGGTATGAAACATACTGTGGCGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAACAAAGGATAGCCTTAGCACGTGCGATACTAAAGAATCCTGCAATTCTGCTGCTAGACGAGGCTACCAGTGCACTTGATAGTATGTCAGAGAACTTGGTTCAAGAAGCACTAGAGAAGATGATGGTTGGGAGAACCTGCATAGTTGTGGCTCACAGACTGTCTACAATACAGAAATCTAACTCTATTGCTGTGATTAAGAATGGGAAAGTAATGGAACAAGGTTCACATAATGAACTGATTTCTCTAGGACGAGATGGGGAATACTATTCTCTTGTCAAACTTCAAAATGGAAGGTCTCCTCGAAGGTAA 3756 0.4228 MGNKGMFRYADGVDKLLILFGTLGSLGDGLQTPLTMFILSDVINAYGDPNSVLTKQDVNKYALRIFLAAIGVGLLAFVEGTCWTRTAERQTSKMKMEYLKSVLRQEVGFFDTQAAGSSTTYQVVSLITVDANAIQDALSEKIPNFLAHFSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVFGKFMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALEKTMELGIKQGFAKGLMLGSLGVIYISWGFQAWVGTFLITEKGEQGGHVFVAGFNVLMGGLSVLSALPHLTGITEASAAVTRLFEMIDRTPTIDSEDKKGKALSYVRGEIEFQDVYFCYPSRPDTPVLQGLNLTIPAGKRVGLVGGSGSGKSTIVALLERFYDPAEGEILLDGHKINRLQLKWLRSQLGLVNQEPVLFATSIKENILFGKEGASIESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIQTAHMIAVLQSGRVIESGTHNELMEMNSGQGEYARMVELQQITTQNAESRNYNLQTEGRNLHHRMSIPPSPASIRSSTQGTPMLHPFSQAFSMGTPYSYSIQYDADDDSYEDNLKRSTYPAPSQWRLLKMNAPEWVSALLGCLGAIGSGAVQPVNAYCVGTLISVYFDTENSKIKSKTRVLALVFLGIGVFNFLTSILQHYNFAVMGERLTKRVREKLLGKLMTFEIGWFDDDENTSAAICARLASEANMVRSLVGDRMSLLAQAIFGSVFAYALGLVLTWRLSLVMIAVQPLVIGSFYSKSVLMKSMAEKARKAQKEGSQLASEAVINHRTITAFSSHKRMLALFKSTLIGPKKESVRQSWISGFGLFSSQFLNTASTALAYWYGGRLLIEGLIEPKHLFQAFLILLFTAYIIAEAGSMTSDLSKGSSAIRSVFAILDRKSEIDPDSTWSVDIRKKIRGRVELKSVFFAYPTRPEQMIFKGLCLKVEAGRTVALVGPSGCGKSTIIGLIERFYEPVKGTVCIDEQDIKSHNLRLLRSHIALVSQEPTLFAGTIRENIAYGKENASETEIRKAAARANAHEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSMSENLVQEALEKMMVGRTCIVVAHRLSTIQKSNSIAVIKNGKVMEQGSHNELISLGRDGEYYSLVKLQNGRSPRR 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0573 1251 FunFam ABC transporter B family member 4 996 1249 - -
Dere08g0573 1251 SUPERFAMILY ABC transporter transmembrane region 668 988 IPR036640 GO:0005524|GO:0016020
Dere08g0573 1251 CDD ABC_MTABC3_MDL1_MDL2 1005 1244 - -
Dere08g0573 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere08g0573 1251 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524|GO:0016887
Dere08g0573 1251 PANTHER ABC TRANSPORTER B FAMILY 6 739 IPR039421 -
Dere08g0573 1251 SUPERFAMILY ABC transporter transmembrane region 5 327 IPR036640 GO:0005524|GO:0016020
Dere08g0573 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere08g0573 1251 FunFam Putative ABC transporter B family member 8 646 992 - -
Dere08g0573 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Dere08g0573 1251 FunFam ABC transporter B family member 15-like 6 340 - -
Dere08g0573 1251 Gene3D - 341 596 IPR027417 -
Dere08g0573 1251 Gene3D ABC transporter type 1, transmembrane domain 65 973 IPR036640 GO:0005524|GO:0016020
Dere08g0573 1251 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Dere08g0573 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 583 IPR027417 -
Dere08g0573 1251 SMART AAA_5 370 562 IPR003593 GO:0016887
Dere08g0573 1251 SMART AAA_5 1032 1224 IPR003593 GO:0016887
Dere08g0573 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 987 - -
Dere08g0573 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Dere08g0573 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Dere08g0573 1251 Pfam ABC transporter transmembrane region 683 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere08g0573 1251 Pfam ABC transporter transmembrane region 19 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere08g0573 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1244 IPR027417 -
Dere08g0573 1251 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Dere08g0573 1251 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Dere08g0573 1251 CDD ABC_MTABC3_MDL1_MDL2 343 583 - -
Dere08g0573 1251 FunFam ABC transporter B family member 19 333 584 - -
Dere08g0573 1251 Gene3D - 995 1250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0573 Dere-ChrDere08 8764385 8770131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0573 19 586 Calmodulin-binding Proteins AT2G36910 36.207 5.68e-106 362