Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0567 ATGACGACGAATGCCATCACCACTTGCCATCATGTTTCCATCCTCCTCATTTCTCAGTCTCAAAGATTCCCTTTTCGCAGAAAAGACCCCTCTTTTTCTCTATACCGTCAAAGGTGCAAACGCCCACTCTCTTTTTGTTTCCCAGGAAAGGAGGCCTCACCGGAATTTGAATTTTCTGGGAATCTCCAACGCAGAATGGTTGGCCCGGAAAGCACCAATTGGCTTTTCGATTATGGTTTAATTGATGACATAACTGTTCCAGATGAGGGCTTCACCGTCCCTGCTTCCGGGTTCAGCTGGCCGGCGCAGACCTTGAATGGTTCTTCGAATATCAGTGTTGAAATTGATGGCTCATTGGGGGATTCTGATGGTTTAAAAGGGTCTGGTTCAAAGAAGAGGGGTAGATCTGAGTCATGTGCTGCTTCTAGCTCAAAGGCATGTCGGGAGAAGTTGCGAAGGGATAGGCTGAATGACAAGTTTCTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAAGCTGCTATTCTGGTTGATGCTGTCCGAATGGTGACACAATTACAAGGTGAAGCCCAGAAGTTGAAAGACTCAAACGTGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAGCTATCAATGCCCAAGCTCAACCTGGTTTCATGCCTCCCCCTCCTGCAATCCCTGCTGCATTTGCTGCACAAGGCCAAGCCCCGGGCAGCAAGTTGGTGCCTTTTATTGGTTACCCAGGCGTTGCCATGTGGCAATTTATGCCACCAGCTGCTGTGGATACTTCACAGGACCATGTACTGCGTCCACCAGTTGCCTAA 912 0.4814 MTTNAITTCHHVSILLISQSQRFPFRRKDPSFSLYRQRCKRPLSFCFPGKEASPEFEFSGNLQRRMVGPESTNWLFDYGLIDDITVPDEGFTVPASGFSWPAQTLNGSSNISVEIDGSLGDSDGLKGSGSKKRGRSESCAASSSKACREKLRRDRLNDKFLELGSILEPGRPPKTDKAAILVDAVRMVTQLQGEAQKLKDSNVSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAINAQAQPGFMPPPPAIPAAFAAQGQAPGSKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0567 303 PANTHER BHLH TRANSCRIPTION FACTOR 70 303 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Dere08g0567 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 211 IPR036638 GO:0046983
Dere08g0567 303 Gene3D - 143 221 IPR036638 GO:0046983
Dere08g0567 303 MobiDBLite consensus disorder prediction 122 144 - -
Dere08g0567 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 191 IPR011598 GO:0046983
Dere08g0567 303 Coils Coil 188 243 - -
Dere08g0567 303 Pfam Helix-loop-helix DNA-binding domain 144 192 IPR011598 GO:0046983
Dere08g0567 303 CDD bHLH_AtILR3_like 145 220 - -
Dere08g0567 303 SMART finulus 146 197 IPR011598 GO:0046983
Dere08g0567 303 FunFam Transcription factor bHLH34 131 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0567 Dere-ChrDere08 8694925 8697790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0567 66 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 74.274 1.43e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g0567 HLH 4.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0567 08 8694925 8697790 Dere08g0567 08 8694925 8697790 ECH