Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0560 ATGCCAACAGTTTGGTTCTCTCTCAAGAGGTCTCTGCACTGCAAATCAGAGCCATCAGAAGTTCATGACCCAAAGTCCAGAAAGCACTTGAGTACAATCTCGACGAAAAGGGCAGGAAGGTCTGGGTGTTCAAGGAGTATAGCAAATCTCAAAGATGTGATTCATGGGAGCAAGAGGCATCTTGAGAAGCCACCAAGTTGCAGCCCAAGATCCATAGGGAGCAGCGAGTTTCTCAACCCTATAACCCATGAAGTGATTTTAAGTAACTCAAGGTGTGAGCTTAAAATCACTGGCTTTGGAGGATTTCAAGATGGACTAGGCAGCGGCGGCGCTAACGGCAGCGGAGGCGGGGGCGGTGGTAGTAATGGTGGTGGTGGTGGGTCTACCTTCGTGGGTACTTTAAGGCCTGGGACTCCGGGGCCTGGGGGGCACCCAACAATGCACTACTTTAATCCTTCTTTTAGGACATCATCTACTCCTCCAAGGAAATCTCCTAGCCCTTTCCTTTTGCCAGATAAAGAAGGGTCTGCTTTGCATGGTGGTGGGCTTCATTCTAGCAATAGGTTGTCTCTTGAGACGGACTCTAATGGGTGTTCCACTGTGAATTGTCACAAATGTGGAGAGCAATTTAGCAAATGGGAAGCTGCTGAAACTCATCATCTCTCCAAGCATGCTGTCACTGAGCTTGTGGAAGGCGATTCATCAAGGAAGATAGTGGAGATAATATGCAGGACGAGCTGGTTAAAGTCTGAGAACCACTGCGGTCGAATTGAGAGAGTTTTGAAAGTCCACAACATGCAAAAGACATTGGCTCGATTCGAAGAGTACAGAGAAATGGTGAAAATCAAAGCCAGCAAACTCCCAAAGAAACATCCTCGGTGTCTTGCCGATGGGAATGAACTTTTAAGGTTCTTTGGCACCACTGTGTCCTGCTCTCTTGGTCTCAACGGCTCTTCCAGCCTCTGCCTATCAGAAAAATGCTGTGTTTGTCGAATTATCAGGAATGGGTTTTCTACAAAAAAGGAGCTCCAGGGTGGAATAGGCGTTTTCACAACTTCCACGAGTGGAAGAGCATTTGAATCTATTGAGATTCTTGACGATGACCCTTCAATCAGAAAAGCACTAATAGTTTGCAGAGTAATAGCTGGCAGGGTTCATAGGCCTCTGGAGAACATTCAGGAAATGGCAGGACAAACAGGGTTTGATTCTTTGGCCGGGAAAGTGGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAACCCTGA 1308 0.4656 MPTVWFSLKRSLHCKSEPSEVHDPKSRKHLSTISTKRAGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFGGFQDGLGSGGANGSGGGGGGSNGGGGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPSPFLLPDKEGSALHGGGLHSSNRLSLETDSNGCSTVNCHKCGEQFSKWEAAETHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLPKKHPRCLADGNELLRFFGTTVSCSLGLNGSSSLCLSEKCCVCRIIRNGFSTKKELQGGIGVFTTSTSGRAFESIEILDDDPSIRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0560 435 Gene3D - 216 434 - -
Dere08g0560 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 433 - -
Dere08g0560 435 SUPERFAMILY ADP-ribosylation 226 434 - -
Dere08g0560 435 MobiDBLite consensus disorder prediction 110 186 - -
Dere08g0560 435 MobiDBLite consensus disorder prediction 17 38 - -
Dere08g0560 435 FunFam C2H2-like zinc finger protein 225 434 - -
Dere08g0560 435 ProSitePatterns Zinc finger C2H2 type domain signature. 203 224 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0560 Dere-ChrDere08 8640824 8642564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0560 1 435 C2H2 Transcription Factor Family AT5G54630 67.094 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g0560 None None None