Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0557 ATGAAAGAGGAATCAACAGGACTGATCATTGGGATTTCAATAGGTGTGGTTATTGGTGTTGTTTTGGCTATTTCTGCACTGTTGTGTCTCAGATACCATAGGAAGCGCTCGCAGATCGGCAATAGCAGTTCCCGGCGGGCGACGACGATACCCATCCGTGAAAATGGTGCTGATTCTTGTACAATTCTGTCAGACTCAACCTTGGGCCCTGAATCACCTGCAAAGTCTGGACGTAGTGGCATGTCCTTCTGGCTTGATGGCTTTAAGAAAAGCAACATGGTTTCAGCTTCTGGAATACCTGAGTATTCTTACAAGGATCTGCAGAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTACAAGGCTCAAATGTCTACCGGCGAGACAGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAAAAAGAATTCCACACAGAGGTTATGTTGTTGGGAAGGTTGCACCATAGAAACCTGGTTAATTTGGTTGGATATTGCGCAGAGAAGGGGCGACAAATGCTTGTATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACCTGTACAGTAAAGAAAATGGGGCATTGAGCTGGGATCTGAGGGTTCATACAGCTCTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGCTAGACCAGTCCATGAAAGCCAGGGTAGCTGATTTTGGGCTTTCAAGAGAAGAGAAGGTGGACAAGCATGCGGCCATTCGAGGTACCTTTGGGTACCTTGACCCTGAGTACATATCCTCAGGGACATTCACTAAGAAAAGCGATGTGTACAGTTATGGGGTATTACTTTTCGAGCTTATAGCAGGCAGAAACCCTCAACAGGGCCTCATGGAATATGTTGAGCTCGCAGCGATGAACAGCGAGGGGAAGATGGGTTGGGAGGAGATAGTGGACTCAGGGCTAGACGGGAAGTTTGATGTACAAGAGCTGAACGAAGTGGCAGGGCTTGCACACAAGTGCATTAACAGAGCCCCAAGGAAACGACCTTCCATGAGAGACGTAGTGCAAGTGCTGATCAGAATCCTTAAGTCAAGACAGAGCAAGAACCGTCACAGGAAGGCGTTGTCTGCCACAGCAGATGAAGTTTGCGTTGATGTTGATCACCCTGAGAGTAGGATTCACCGGAGAGAAGAATCCATAGATAGTGCAGCTGACAATTATGAAGTGTAG 1278 0.464 MKEESTGLIIGISIGVVIGVVLAISALLCLRYHRKRSQIGNSSSRRATTIPIRENGADSCTILSDSTLGPESPAKSGRSGMSFWLDGFKKSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGRQMLVYVYMSKGSLASHLYSKENGALSWDLRVHTALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMKARVADFGLSREEKVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSYGVLLFELIAGRNPQQGLMEYVELAAMNSEGKMGWEEIVDSGLDGKFDVQELNEVAGLAHKCINRAPRKRPSMRDVVQVLIRILKSRQSKNRHRKALSATADEVCVDVDHPESRIHRREESIDSAADNYEV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0557 425 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Dere08g0557 425 Gene3D Transferase(Phosphotransferase) domain 1 188 401 - -
Dere08g0557 425 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Dere08g0557 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Dere08g0557 425 SMART serkin_6 112 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0557 425 CDD STKc_IRAK 118 377 - -
Dere08g0557 425 PANTHER OS01G0750732 PROTEIN 4 389 - -
Dere08g0557 425 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 396 - -
Dere08g0557 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Dere08g0557 425 SUPERFAMILY Protein kinase-like (PK-like) 101 383 IPR011009 -
Dere08g0557 425 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0557 Dere-ChrDere08 8630833 8633193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0557 24 374 Glycoside Hydrolase AT3G07070 38.378 2.55e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Dere08g0557 PK_Tyr_Ser-Thr 7.7e-53 CL0016