Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0543 ATGGACGTTCTTTCTTTCTTGATTGTCCTTTCCTGTATACTTGTCTCTTCTCTTCAAGCTTCCATGGCGGTTGATTCCGTCCTTCGGTCCAATTCCTTGATGAGTGATGGCATGACATTAGTTTCCAAAGGTGGAAGCTTTGAAATTGGTTTCTTCAGTCCTGGAAACTCCAATAAATACTATCTGGGAATTTGGTACAAGAACATCCCAATTCAGACAGTAGTTTGGGTGGCAAATAGAGTCAACCCAATCAATGATTCCTCTGCTGCCACCTTAATAGTAAACAGCACTGGCAGTCTTGTCCTCACTGAAAACGACACTGTTGTTTGGTACTCAATTTCGCAAAAACGAGTGCAGAATCCAGTGGCTGAGCTCCTAGATTCTGGGAATCTTGTGGTACGAGATGAGGAAGAAGCAAACCCAGAAGCCTATTTGTGGGAAAGCTTCGATTTTCCATCTGACACAGTGTTACCAGAGATGAAATTAGGATTCGACCTAAGGACAGGTTTGAATAGGCGTCTAACAGCTTGGAGGAGTCCAGAAGATCCATCTCCAGGAGACTTTTCTTTTACTATAGCCCTCAATAACTATCCTGAATTTTATATGATGAAAGGAGATTCAAAGTACTTCAGAACTGGACCATGGAATGGCATGGGATTTAGTGGCTCGCCAGAACTGAAGCCAAATCCAGTTTTTGATTACAAGTTCGTGTCCAACAAAAATGAGGCCTACTATTGGTACAGTCTCAAGACTGATTCCGTAATCTCAAGATTAGTGATGAACCAAACCAATCATGTTCGTTACCGCTATGTGTGGGCAGCGAGTGATAAAACCTGGAGGATTTATTCATCAATTCCACAAGACTATTGTGATACTTATGGGCTATGTGGACCCTATGGAAATTGTATCCTCTCTGATTCACCAGTGTGCCAATGTTTAAAAGGGTTCAAGCCCAAGTCACCCGAAAAATGGAACACAATGGACTGGTCTGAAGGTTGTGTCCGGAATGTAGATTTGAAGTGCGAGGACAAAAGCAAGGTTGGGTTTGTGAAAATGAGTGGGATGAAGGTGCCTGATACTACGCATACTTGGCTGGATGAGACGATAGGTCAAGAGGAATGCAGAGTGAAGTGCTTGAGCAATTGTTCTTGTATGGCCTATGCAAATTCAGATATAAGAGGACAAGGTGGTGGTTGTGCCATGTGGTTTGGTGATTTAATTGACATCAGACAGTTTTCTGTTGGGGGACAAGATCTGTATATTCGAATGGACGCTTCAGAACTAGACTCGCAACATGAGGACAGGAAGAAGCTGACAATAGTAGTTGCTACCATTATACCTGTAGTTTTTGGGATGCTCTTAGTTGGGTACTATTATACCAGAAGTGTACGAAGAAAAATGACGGTTATATGTTTTCCCATTTTGCTAGAGAAACAAAAAAGTTTTGAAAAACATAGTGATGGACATGAGGATGACCTGGATCTCCCATTGCTTGAGATGTCAACAATAGCAATGGCCACTGATAACTTCTCAACGGAAAAGAAGATTGGAGAAGGTGGCTTTGGACCTGTATACAGGGGAAGATTAGACAATCAGCAAGAAATTGCTGTGAAAAGACTTTCAAAAAGCTCGGGGCAAGGAATAATTGAGTTCAAGAATGAAGTAAAATTGATCGCAAAACTTCAACACCGTAATCTTGTTAAACTAGTTGGTTGTTGCATTCAGGAAGAGGAGAAAATGCTAGTTTATGAATACATGCCAAATGGTAGCCTGGACTCTTTCATATTTGATAGCAGAAAAGGCAAATTACTTGATTGGTCCAAGCGCTTCAACATTATTTGTGGAATCGCCCGGGGCCTTCTATATCTCCATCAAGATTCTAGATTGCGGATCATTCACAGGGATCTCAAAGCAAGCAACATTTTACTAGATGAAGAGTTGAACCCCAAAATATCAGATTTTGGAATGGCTAGAACTTTTGGAGGTGACCAAACCGAAGGAAGCACGAACAGAGTAGTAGGAACCTATGGTTACATGTCACCAGAATATGCCGCTGATGGAGTATTTTCAGTGAAATCTGATATATTTAGCTTTGGTGTTTTGTTATTGGAGATAATAATTGGCAAGAGAAATAGAGGGTTTTTTCATGCGAACATCACTCATAACCTTGTTGGTCAGGCCTGGGTAGAGTGGAAAGAAGGGAGGGTTTTAGGATTGATTGACAAAAACATCGAGGATGCATGGGATGAATCAGAAGTACTACGTTGTATCCACATTGGCCTCTTGTGTGTTCAGCAAAATCCAGAAGATAGGCCTACCATGTCATCAGTGGTTCTGATGTTGGGAAGTAAGATAGAATTGGCAGAGCCTAAACAGCCTGGTTTCTATGTGAGAAAGCTTTCAGTTGAAGCAAATTCATCCTCAACTCAGCTAGAATCTGGATCAACCAATGAAATTACAATTTCTCAATTGGAACCCCGATAA 2484 0.4138 MDVLSFLIVLSCILVSSLQASMAVDSVLRSNSLMSDGMTLVSKGGSFEIGFFSPGNSNKYYLGIWYKNIPIQTVVWVANRVNPINDSSAATLIVNSTGSLVLTENDTVVWYSISQKRVQNPVAELLDSGNLVVRDEEEANPEAYLWESFDFPSDTVLPEMKLGFDLRTGLNRRLTAWRSPEDPSPGDFSFTIALNNYPEFYMMKGDSKYFRTGPWNGMGFSGSPELKPNPVFDYKFVSNKNEAYYWYSLKTDSVISRLVMNQTNHVRYRYVWAASDKTWRIYSSIPQDYCDTYGLCGPYGNCILSDSPVCQCLKGFKPKSPEKWNTMDWSEGCVRNVDLKCEDKSKVGFVKMSGMKVPDTTHTWLDETIGQEECRVKCLSNCSCMAYANSDIRGQGGGCAMWFGDLIDIRQFSVGGQDLYIRMDASELDSQHEDRKKLTIVVATIIPVVFGMLLVGYYYTRSVRRKMTVICFPILLEKQKSFEKHSDGHEDDLDLPLLEMSTIAMATDNFSTEKKIGEGGFGPVYRGRLDNQQEIAVKRLSKSSGQGIIEFKNEVKLIAKLQHRNLVKLVGCCIQEEEKMLVYEYMPNGSLDSFIFDSRKGKLLDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNILLDEELNPKISDFGMARTFGGDQTEGSTNRVVGTYGYMSPEYAADGVFSVKSDIFSFGVLLLEIIIGKRNRGFFHANITHNLVGQAWVEWKEGRVLGLIDKNIEDAWDESEVLRCIHIGLLCVQQNPEDRPTMSSVVLMLGSKIELAEPKQPGFYVRKLSVEANSSSTQLESGSTNEITISQLEPR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0543 827 Gene3D Transferase(Phosphotransferase) domain 1 586 792 - -
Dere08g0543 827 MobiDBLite consensus disorder prediction 807 827 - -
Dere08g0543 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Dere08g0543 827 ProSiteProfiles Protein kinase domain profile. 510 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0543 827 Pfam PAN-like domain 341 409 IPR003609 -
Dere08g0543 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
Dere08g0543 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Dere08g0543 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 585 - -
Dere08g0543 827 SMART blect_4 31 152 IPR001480 -
Dere08g0543 827 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Dere08g0543 827 Pfam D-mannose binding lectin 73 178 IPR001480 -
Dere08g0543 827 Pfam Protein tyrosine and serine/threonine kinase 512 779 IPR001245 GO:0004672|GO:0006468
Dere08g0543 827 Pfam Domain of unknown function (DUF3403) 785 827 IPR021820 GO:0004674
Dere08g0543 827 SMART ntp_6 344 423 IPR003609 -
Dere08g0543 827 CDD PAN_AP_plant 337 422 - -
Dere08g0543 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 216 IPR036426 -
Dere08g0543 827 Gene3D - 20 149 IPR036426 -
Dere08g0543 827 SMART serkin_6 510 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0543 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 772 - -
Dere08g0543 827 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Dere08g0543 827 CDD B_lectin 30 152 IPR001480 -
Dere08g0543 827 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Dere08g0543 827 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
Dere08g0543 827 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Dere08g0543 827 SUPERFAMILY Protein kinase-like (PK-like) 496 792 IPR011009 -
Dere08g0543 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Dere08g0543 827 CDD STKc_IRAK 516 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0543 Dere-ChrDere08 8413999 8417420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0543 440 798 Receptor kinase-like Gene Family AT4G23190 52.186 1.80e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere08g0543 PK_Tyr_Ser-Thr 6e-52 CL0016