LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g0542	ATGCTTATAAAGAATGAGGGACTCTCGGCACTGGTTTGTGCTGCTTTGCGAATTGTAGGAGTTGAGTGTAGTCCAACTTCAACCATGGCAGCAGCTGTCGTCGTGCCATTAGGTCTACTCTTCTTCGCCTCGGGCCTTCTTGCTAATCTCATTCAGGCAATATATTTTGTCCCTTTACAGCCGCTGTCAAAGAATTTGTATAACTGGATCAATAAGGCAAAACTATTAGCTGCTCAGGAATATGAAACCTCAACAGGACTGCCTATTCCTAGAAATGCTTTGATTCTCGAACAAAGGGTTTTGTTTCTGCAGCAGTTTCCTGCTGGAGGGCAGGATCTGTATGTTCGAATGGCTGCTTCAGAATTAGAGGTGGAATATGGGCGTGGAAAGACGTTCAGAATAATAGTTGCTACCACCATTGCTGCTATTTCAGGGACGCTTCTACTTGGATGTTATTGTATCTATGCAGTCCGCAGAAAGATGACAGATAAATCAAGAATTAAAGAAGAAGATCAACACAATGAAGGATCTGAGGATGAGCTAGACCTCACATTGCATGACCTGGGAACAATAGCTAGAGCCACCGATAACTTCTCGCCAGAGAACAAAATTGGACAAGGTGGATTTGGAGCTGTATATAAGGGAAAATTAGAAAATGGCAAAGTAATTGCCGTAAAGAGGCTTTCTAGGAGTTCAGGACAAGGACTGCTTGAGTTCAAAAATGAAGTAAGACTTATTGCAAAACTTCAGCATCGAAATCTCGTAAAACTTCTTGGCTGTTGCATTCAAGGCCAAGAGAAGATGCTTGTTTATGAGTACATGCCAAATGGCAGCCTGGACTCCTTCATTTTTGATCAAAATCGAGGAAAGTTGCTAGATTGGCCTAAACGCTTCCACATTATTTGGGGTATTACTCGAGGCCTTATGTATCTTCATCAAGATTCTAGATTGAGAATTATTCATAGAGACCTAAAAGCAAGTAACATTTTGTTGGATGATAAGTTGAATCCGAAAATATCAGATTTTGGTATGGCTAAAACTTTTGGAGGGGAGCAAACAGAAGGCAATACAAATAGAGTTGTGGGTACTTATGGTTATATGGCTCCAGAATACGCAGCTGATGGATTATTCTCTATAAAGTCTGATATCTTCAGTTTTGGTATTTTGGTGATGGAAATTATATGTGGGAAGAGAAATAGAGGGTTTTATAATGCAGACCAATCTCATAACCTTATTAGTCATGCATGGTTGTTGTGGAAGGAAGGGAAGGCTTTAGAATTGATAGACAAAAACATTGAGGAGACATATGTCGAATTAGAAGTAATCCGCTGCATCCACATTAGTCTTTTGTGTGTGCAACAACATCCAGAGGACAGACCCAACATGTCATCTGTTGTTCTTATGCTTGGGAGTGAGAATGAATTGCCTGAGCCCAAACAACCAGGTTTCTTCTTAGGAAAGGTTTCATGTGAAGCAAATTCATCCTCAAGCCACATGCAGTCTGGCTCAACCAATGAGATAACCATGACCTTGTTAGAAGCTCGATGA	1548	0.4083	MLIKNEGLSALVCAALRIVGVECSPTSTMAAAVVVPLGLLFFASGLLANLIQAIYFVPLQPLSKNLYNWINKAKLLAAQEYETSTGLPIPRNALILEQRVLFLQQFPAGGQDLYVRMAASELEVEYGRGKTFRIIVATTIAAISGTLLLGCYCIYAVRRKMTDKSRIKEEDQHNEGSEDELDLTLHDLGTIARATDNFSPENKIGQGGFGAVYKGKLENGKVIAVKRLSRSSGQGLLEFKNEVRLIAKLQHRNLVKLLGCCIQGQEKMLVYEYMPNGSLDSFIFDQNRGKLLDWPKRFHIIWGITRGLMYLHQDSRLRIIHRDLKASNILLDDKLNPKISDFGMAKTFGGEQTEGNTNRVVGTYGYMAPEYAADGLFSIKSDIFSFGILVMEIICGKRNRGFYNADQSHNLISHAWLLWKEGKALELIDKNIEETYVELEVIRCIHISLLCVQQHPEDRPNMSSVVLMLGSENELPEPKQPGFFLGKVSCEANSSSSHMQSGSTNEITMTLLEAR	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g0542	515	ProSitePatterns	Protein kinases ATP-binding region signature.	204	226	IPR017441	GO:0005524
	Dere08g0542	515	SMART	serkin_6	198	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0542	515	Pfam	Domain of unknown function (DUF3403)	473	515	IPR021820	GO:0004674
	Dere08g0542	515	CDD	STKc_IRAK	204	469	-	-
	Dere08g0542	515	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	161	273	-	-
	Dere08g0542	515	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	128	515	-	-
	Dere08g0542	515	SUPERFAMILY	Protein kinase-like (PK-like)	184	481	IPR011009	-
	Dere08g0542	515	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	274	477	-	-
	Dere08g0542	515	ProSiteProfiles	Protein kinase domain profile.	198	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0542	515	Gene3D	Phosphorylase Kinase; domain 1	156	273	-	-
	Dere08g0542	515	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	319	331	IPR008271	GO:0004672\|GO:0006468
	Dere08g0542	515	Gene3D	Transferase(Phosphotransferase) domain 1	274	479	-	-
	Dere08g0542	515	Pfam	Protein tyrosine and serine/threonine kinase	201	467	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g0542	Dere-ChrDere08	8400175	8406809	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g0542	128	484	Receptor kinase-like Gene Family	AT4G23190	53.186	1.60e-133	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere08g0542		PK_Tyr_Ser-Thr	9e-50	CL0016