Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0541 ATGTGTCAGCAATTGATTCAGCAACTCGAACAGGTACAAAAGAAACTTTTGCAGGGACAAGAGAAGCTGAGCAAAAGCTGCTGCTCCTTCTCTTACAATCAATTTTCAATGGACCTTCTTGCTTTCTTGAGTATCTTTGCTTGTTTTCTTCTTCCCATACTCAAGCCTTCCATAGCAGCTGATTCCCTCGAATCCCTTCGTCAGTCCCAGTTTGTCAGGGACGATGGAACCACCTTGGTTTCTAAAAATGGAACCTTTGAACTTGGTTTCTTCACTCCTGGAACTTCCGACAAACGTTACCTCGGTATTTGGTACAAGAACATCCCGGTTCAAACCGTGGTTTGGGTTGCAAACCGCCTCAATCCAATCAATGGTTCATCTGCGACCTTAACCATGGACTCCACTGGTAATCTTGTCCTGTCCCAAAACAACACTGTTCTCTGGTCTACAAATTCCAAGACACAAGCACGGAGTCCAACCGCCCAGCTCTTGGATTCTGGAAATCTTGTGGTGATAGATGAGAATGAAGCAAACCCAGAAGCTTATTTGTGGCAAAGCTTTGACTATCCATCTGATACATTATTGCCTGGTATGAAATTTGGATGGGACTTCAAAACTGGTTTGAATTGGTCTCTAACAGCTTGGAAGAGCCCAGACGATCCATCCCCTGGAGATTTGACCAACGTTGTAATGCTAAATAACTATCCTGATTCGTATTTGATGAAGGAAAACCAAAAATACTATCGATTTGGACCATGGAATGGCTTGCATGCGAGTGGTTCTCCCGAGGTAAAGCCCAACCCTGTTTTCGAATACACCTTTGTCTCCAATAAGGATGAGTTCTACTACATGTTCTACCTGAAGAATAATTCTGTATTCACAAGATTGGTAATGAACGCAACAGATTCTGCTCGTTATCGCTATGTATGGTTGGAAACTGATAAAAAATGGATAATTTATTCGACAAAGCCAGTAGACCACTGCGACAGTTATGGGCTATGTGGAGCAAATGGCAATTGTGTCATTAATGATTCACCAGTTTGCCAATGTTTGGAAGGGTTCTCGCCTAAGTCACCTCAACATTGGGATTCAGCGGACTGGTCAGACGGGTGTATCCGAAATAAACCTCTGAACTGCTCTGAGAACTACAAGGATGGGTTCATTAAATTTACGGGCTTGAAGGTACCGGACACTACACAAACCTGGCTTGATCGGACAATGAATCTAGAGCAATGCAGACAGAAGTGCCTGGATAATTGTTCTTGCATGGCCTACACTAATTCAGATATCAGAGGGGCAGGTAGCGGTTGTGCCTTGTGGTTTGGGGATCTTTTTGATATGAGATATTATGCATCTGGGGGTCAGGATCTATATGTTCGAATGGATGCTTCAGAATTTGAATCTGGGAATAAAAAGAAGTTGATAATGGCCGTTACTATTCCCATTGCTGCGATTTTCGGGATGCTTTTAGGTGGGGGCTATTACATCTACAGAGTCCGCAGGAAGAGGAGAGAGAAGTTCAAAAATTTTAAAGATCAAATTCAAAACAATGAAGGATCAAAAAATGATCTGGATCTCCCTGTGTTTGATCTGCCAATGATAGCAAGTGCCACCGATAACTTCTCAAAGAAGAACAAAATTGGGGAAGGTGGATTCGGACCTGTGTATTGGGGAAAATTATTAAGTGGACAAGAAATTGCTGTGAAGAGACTTTCAAGAAGTTCCGGGCAAGGATTGAATGAGTTCAAAAATGAAGTAAGATTTATTGCAAAACTCCAACATCGAAATCTTGTGAAACTTCTTGGCTGTTGCATTCAGGAACAAGAAAAGATGCTAATCTATGAGTATATGCCAAACAGAAGCTTGGACTCCTTCATTTTTGATGAAACCAAAGGGAGATTGTTTGATTGGTCTAGACGTTTCCACATTATTATGGGAATTGGTCGAGGTCTTGTGTATCTTCATCAAGATTCAAGATTAAGAATTATCCATAGAGATCTAAAAGCAAGTAATATTTTACTTGACGACAAGTTGACCCCAAAAATATCAGATTTTGGACTAGCTAAAACTTTTGGAGAAGAGCAAACTGAAGGCAACACAAATAGAGTAGTGGGGACTTATGGGTATATGGCACCGGAATATGCCGCTGATGGGCTATATTCTGTGAAATCTGATATCTTCAGTTATGGTATACTAGTGATGGAAATTATATGTGGGAAGAAAAATAGAGGGTTTTATCTAGAAGATTTCAAGCACAATCTTATTGGTCATGCATGGATAATGTGGAAAGAAGGAAGGGTTTTAGAATTGGTTGACAGAAACATACAAGAGACTTGCAATATATCAGAAGTATTGAGGTGCATTAATGTGAGTCTATTGTGTGTGCAACAAAATCCAGAGGATAGGCCCACCATAGCATCTGCAGTTTTGATGTTGGAGAGTGAAATTGAACTTCCTGAACCAAAAGAACCAGGTTTCTTTCAAGGAAAGGATGCAAGTCAACCACATACTTCCAACTCAAGTCAGAAGCAATCAAGCTCAACCAATGAAATAACCGTGACCTTAATTGAAGCCCGATGA 2580 0.4097 MCQQLIQQLEQVQKKLLQGQEKLSKSCCSFSYNQFSMDLLAFLSIFACFLLPILKPSIAADSLESLRQSQFVRDDGTTLVSKNGTFELGFFTPGTSDKRYLGIWYKNIPVQTVVWVANRLNPINGSSATLTMDSTGNLVLSQNNTVLWSTNSKTQARSPTAQLLDSGNLVVIDENEANPEAYLWQSFDYPSDTLLPGMKFGWDFKTGLNWSLTAWKSPDDPSPGDLTNVVMLNNYPDSYLMKENQKYYRFGPWNGLHASGSPEVKPNPVFEYTFVSNKDEFYYMFYLKNNSVFTRLVMNATDSARYRYVWLETDKKWIIYSTKPVDHCDSYGLCGANGNCVINDSPVCQCLEGFSPKSPQHWDSADWSDGCIRNKPLNCSENYKDGFIKFTGLKVPDTTQTWLDRTMNLEQCRQKCLDNCSCMAYTNSDIRGAGSGCALWFGDLFDMRYYASGGQDLYVRMDASEFESGNKKKLIMAVTIPIAAIFGMLLGGGYYIYRVRRKRREKFKNFKDQIQNNEGSKNDLDLPVFDLPMIASATDNFSKKNKIGEGGFGPVYWGKLLSGQEIAVKRLSRSSGQGLNEFKNEVRFIAKLQHRNLVKLLGCCIQEQEKMLIYEYMPNRSLDSFIFDETKGRLFDWSRRFHIIMGIGRGLVYLHQDSRLRIIHRDLKASNILLDDKLTPKISDFGLAKTFGEEQTEGNTNRVVGTYGYMAPEYAADGLYSVKSDIFSYGILVMEIICGKKNRGFYLEDFKHNLIGHAWIMWKEGRVLELVDRNIQETCNISEVLRCINVSLLCVQQNPEDRPTIASAVLMLESEIELPEPKEPGFFQGKDASQPHTSNSSQKQSSSTNEITVTLIEAR 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0541 859 Pfam Protein tyrosine and serine/threonine kinase 543 808 IPR001245 GO:0004672|GO:0006468
Dere08g0541 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 505 616 - -
Dere08g0541 859 Pfam Domain of unknown function (DUF3403) 816 859 IPR021820 GO:0004674
Dere08g0541 859 PIRSF SRK 34 859 IPR024171 GO:0004674
Dere08g0541 859 CDD B_lectin 75 190 IPR001480 -
Dere08g0541 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Dere08g0541 859 ProSiteProfiles PAN/Apple domain profile. 379 462 IPR003609 -
Dere08g0541 859 Pfam D-mannose binding lectin 112 216 IPR001480 -
Dere08g0541 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 113 221 IPR036426 -
Dere08g0541 859 ProSiteProfiles Protein kinase domain profile. 541 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0541 859 Gene3D Phosphorylase Kinase; domain 1 501 616 - -
Dere08g0541 859 SMART blect_4 70 190 IPR001480 -
Dere08g0541 859 Coils Coil 2 22 - -
Dere08g0541 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 378 461 - -
Dere08g0541 859 Pfam PAN-like domain 379 447 IPR003609 -
Dere08g0541 859 Gene3D - 60 187 IPR036426 -
Dere08g0541 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 59 187 - -
Dere08g0541 859 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 46 803 - -
Dere08g0541 859 MobiDBLite consensus disorder prediction 820 851 - -
Dere08g0541 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
Dere08g0541 859 ProSiteProfiles EGF-like domain profile. 324 360 IPR000742 -
Dere08g0541 859 Pfam S-locus glycoprotein domain 248 358 IPR000858 GO:0048544
Dere08g0541 859 SMART ntp_6 382 461 IPR003609 -
Dere08g0541 859 ProSiteProfiles Bulb-type lectin domain profile. 63 184 IPR001480 -
Dere08g0541 859 SMART serkin_6 541 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0541 859 SUPERFAMILY Protein kinase-like (PK-like) 525 847 IPR011009 -
Dere08g0541 859 MobiDBLite consensus disorder prediction 831 851 - -
Dere08g0541 859 Gene3D Transferase(Phosphotransferase) domain 1 617 822 - -
Dere08g0541 859 CDD PAN_AP_plant 376 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0541 Dere-ChrDere08 8393686 8397325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0541 452 827 Receptor kinase-like Gene Family AT4G23190 50.789 5.09e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere08g0541 PK_Tyr_Ser-Thr 3.1e-48 CL0016