Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0540 ATGGCTACTTCAGAATTTGAATCTGGGAATGGAAAAAGGTCGGCAATGGCCATTGCTATCCCCATTGCTGCAATTTTCGTGATGCTTTTAGTTGTAGGCTTTTACATCTACAGACTCCGCAGAAAGAGAGGTGGGAAATCAGAAAATGTAAAAGACCAAATTCCAAAAGATGAAGAATCAAAGGATGATCTAGATCTACCAGCATTTGATCTGCCATTAATAGCCAGTGCTACCGCTAACTTCTCAGAGGAGAACAAAATTGGAGAAGGAGGATTTGGACCTGTATATTGGGGAAAATTATTAGATGGGCAAGAAATTGCAGTTAAGAGACTTTCAAAAAAATCAACACAAGGACTGACTGAGTTCAAGAATGAAGTGAAATTTATTGCAAAACTCCAACATCGCAATCTTGTGAAACTTCTTGGATGTTGCATTCAGGGACAAGAAAAGATGCTCGTATATGAGTATATGCCACATAGAAGCTTGGATTCCTTTATTTTTGATGATACCAAAGGAAAGTTATTAAATTGGCCTAAGCGCTTTCACATTATTTTGGGAATTGGTCGAGGTCTTATGTATCTTCATCAAGATTCAAGATTAAGAATTATTCATAGGGATTTGAAAGCGAGCAACATTTTACTTGATGATAAATTGATTCCAAAAATATCAGATTTTGGGTTGGCTAAAACTTTTGGAGAAGAGCAGACGGAAGGCAATACAAATAGAGTAGCAGGGACTTATGGATACATGGCACCAGAATATGCTGCTGATGGGCTATATTCTGTAAAATCTGATGTCTTTAGCTTTGGTATCTTAGTGCTAGAAATTATATGTGGAAGAAAAAACAGAGGTTTTTATCTTGAAGATTCCAGCCACAATCTAATTGGTCATGCATGGATATTGTGGAAAGAAGGAAGGGTTTTAGAATTGGTTGACAAGAACATTGAGGAGATGTGCATTGTTTCAGAAGTACTGAGGTGCATTCATGTGAGTCTACTGTGTGTCCAACAAAATCCAAAGGATAGGCCCACCATGGCATCTGTAGTTTTGATGCTGGAAAGTGAAATTGAACTTCTTGAGCCTAAACAACCAGGTTTCTTTCAAGATATGGGTTCAGTTCTACCAGACACTTCCAACTCAAGTCAAATGCAATCGAGCTCAACCAATGAAATAACAATGACCTTACTTGATGCCCGATGA 1200 0.38 MATSEFESGNGKRSAMAIAIPIAAIFVMLLVVGFYIYRLRRKRGGKSENVKDQIPKDEESKDDLDLPAFDLPLIASATANFSEENKIGEGGFGPVYWGKLLDGQEIAVKRLSKKSTQGLTEFKNEVKFIAKLQHRNLVKLLGCCIQGQEKMLVYEYMPHRSLDSFIFDDTKGKLLNWPKRFHIILGIGRGLMYLHQDSRLRIIHRDLKASNILLDDKLIPKISDFGLAKTFGEEQTEGNTNRVAGTYGYMAPEYAADGLYSVKSDVFSFGILVLEIICGRKNRGFYLEDSSHNLIGHAWILWKEGRVLELVDKNIEEMCIVSEVLRCIHVSLLCVQQNPKDRPTMASVVLMLESEIELLEPKQPGFFQDMGSVLPDTSNSSQMQSSSTNEITMTLLDAR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0540 399 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 157 360 - -
Dere08g0540 399 Gene3D Transferase(Phosphotransferase) domain 1 157 363 - -
Dere08g0540 399 ProSiteProfiles Protein kinase domain profile. 81 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0540 399 SUPERFAMILY Protein kinase-like (PK-like) 66 388 IPR011009 -
Dere08g0540 399 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 45 156 - -
Dere08g0540 399 Pfam Protein tyrosine and serine/threonine kinase 84 350 IPR001245 GO:0004672|GO:0006468
Dere08g0540 399 SMART serkin_6 81 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0540 399 CDD STKc_IRAK 87 353 - -
Dere08g0540 399 Gene3D Phosphorylase Kinase; domain 1 55 156 - -
Dere08g0540 399 PIRSF TyrPK_CSF1-R 323 395 - -
Dere08g0540 399 PIRSF TyrPK_CSF1-R 181 282 - -
Dere08g0540 399 PIRSF TyrPK_CSF1-R 4 42 - -
Dere08g0540 399 PIRSF TyrPK_CSF1-R 98 171 - -
Dere08g0540 399 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 398 - -
Dere08g0540 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0540 Dere-ChrDere08 8388715 8390749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0540 14 366 Receptor kinase-like Gene Family AT4G23230 54.062 4.13e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere08g0540 PK_Tyr_Ser-Thr 6.2e-50 CL0016