Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0538 ATGCAAATAGTAAGTGCCTTTCTGATGCTGGTTTCTTCCTTAATGTAGCAAAAGAACCAAAAATTATCTGAAATAAAAATTGGAATTGATGAAGTAGAAGCGTTGATTCAAAAAATGGACCTTGAGGCAAGAAATTTGCAACCAAACATCAAGGCTATGCTTCTTACTAAGTTGCGGGAGTATAAATCAAATCTAAACAATCTTAAAAGTGAAGTTAAGAAAATTGTATCCGGTAACATGAACCCTTTTGCATGGGATGAGTTGTTGGAATCAGGCATGACAAATGCTATGACGATATGGAGAACTTATGCTGCATCTTTGGTTATGGCTCGTAGTCATAGGATTGAGTCTGTGCTGGAAATGCCTCTGGTGGTAAGTGATTCTGCTGAGGGCGTTGAGAAGATGAAGGATGCGATCAAAGTTTTAAAGCAGACCGGCCCTCTGATTGTTTATGGAACTGAAGGAGCTAAAGCAGTGAAGGCCTTCAGGAATACTGGTGTTGTGGTTGCCAATGTGGAGAGACTGAATCTACTTAAGGTAGCACCTGGTGGTCATCATGGGAGGTTTGTTATTTGGACCAAATCTACATTTGAGAAGCTGTATTCTATATATAGGTCATCGACAAATCATGGGAGAAGAAGAAGGATTACCTACTTTCGAAAGCGAAGTTGGTCAATTCTGATAAGCCAAGGGGAAGAATTTAGAAAAAATAAGGCCAAAGGCAGGCGTGGTTTGGTGGCTTAA 744 0.4005 MQIVSAFLMLVSSLMXQKNQKLSEIKIGIDEVEALIQKMDLEARNLQPNIKAMLLTKLREYKSNLNNLKSEVKKIVSGNMNPFAWDELLESGMTNAMTIWRTYAASLVMARSHRIESVLEMPLVVSDSAEGVEKMKDAIKVLKQTGPLIVYGTEGAKAVKAFRNTGVVVANVERLNLLKVAPGGHHGRFVIWTKSTFEKLYSIYRSSTNHGRRRRITYFRKRSWSILISQGEEFRKNKAKGRRGLVA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0538 247 SUPERFAMILY t-snare proteins 16 77 IPR010989 GO:0016020|GO:0016192
Dere08g0538 247 Pfam Vesicle transport v-SNARE protein N-terminus 16 74 IPR007705 GO:0006886|GO:0016020
Dere08g0538 247 Gene3D - 9 80 IPR038407 -
Dere08g0538 247 Pfam Ribosomal protein L4/L1 family 101 200 IPR002136 GO:0003735|GO:0005840|GO:0006412
Dere08g0538 247 SUPERFAMILY Ribosomal protein L4 99 200 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere08g0538 247 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 3 82 - -
Dere08g0538 247 Coils Coil 51 78 - -
Dere08g0538 247 Gene3D - 145 232 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere08g0538 247 Gene3D - 93 144 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere08g0538 247 PANTHER 60S RIBOSOMAL PROTEIN L4 144 214 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0538 Dere-ChrDere08 8290849 8293480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0538 99 206 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 57.143 8.50e-40 140