Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0535 ATGGCGGATGATCAATTTCAAGCTAGTGGAAACTGGTGGGACTCAGCTAGAAACTCCAGGTTCGAAACTGAGGCACCACAGTCCTCCTCCTCCTCTGCCCTCAACTTCGCCTGGCAACAACCAGATATGTCTCACGACCTCAAGCCAAGGTCTTCCATGGATTCCATGTCTGCTTCAGCTTCTTCCGCCACCGACCCCAACTTGCACATGATGGGTTTGGGCCTCTCTTCCCAACCCATGGATTGGAATCAACCCTCCTTTCTCCGAGGTGCAGAGAAGGGTGGGGAGAGCAGTTATTTGAGCGCATCAAGCACGAATTTTCAGCAAGAAAGTGCGATGGGGTTGTCTCAAGTTCAATGGAGGGACAAGTTGTTTTCTGCAGATTCGTCTTCTTCCACGAACGAATTCAAACATGTGAATAGGGGTTTCTCTTTGGATCAAACGCAGTTCAGTCCTCAATATAGCTCGGGGGATAATAGTACTGTGACAACCCAAGGCTTGGCCTCTAGCACTAATTTTCAGATGGATTTATATGGGAACTCCTCAATACTACAAGGACTTCTAGGACCGGATCATAGTACTCAAGTCCAGCATCATCACCAAGCTTCATTCGATCATCAGAATCGCCAAATGAACTTCCCATACCCTTCAAGCTACGGATCATTGAACTCTAATGATCAGTTAATGCCTGCTTGGTCTAAAGTTCCGCAGTTTCTGAGAGCTTCACCTCCAAAACAACAGCCACCCCATAATAATCAGTTGCATTTCACGAACAACGCTCCCTTCTGGAATGCTTCTGAGCCTACCAATATTAAAGATGTTAGATCTAACTTCTTCCCCACCTTGCAACCCCCATTCCCCACGCCAAATTTCGATGTACAGTCCAAGAATATATGCGAAGTTAGGGAGTCGACTGGTGTGGTGAAGAAAAGTGGGAGCGAAGCAGCACCCAAAAGGCCTCGGAACGAAACCCCATCGCCTTTGCCAGCTTTTAAGGTGAGAAAGGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACCGATACAGCCTCGGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAAGTGACAGTTTTGAGCACACCGTATATGAAAAGTGGAGCTCCCATACAACATCAACAGAGTCCTGGTAAATCTAAGGAGGGTGAGGGTGGAAAACAAGATCTGAGAAGTAGAGGGTTATGTTTGGTGCCAGTGTCGAGTACATTTCCAGTGACTCATGAAACGACAGTAGATTTTTGGACGCCAACGTTCGGAGGAACTTTCAGATGA 1329 0.4703 MADDQFQASGNWWDSARNSRFETEAPQSSSSSALNFAWQQPDMSHDLKPRSSMDSMSASASSATDPNLHMMGLGLSSQPMDWNQPSFLRGAEKGGESSYLSASSTNFQQESAMGLSQVQWRDKLFSADSSSSTNEFKHVNRGFSLDQTQFSPQYSSGDNSTVTTQGLASSTNFQMDLYGNSSILQGLLGPDHSTQVQHHHQASFDHQNRQMNFPYPSSYGSLNSNDQLMPAWSKVPQFLRASPPKQQPPHNNQLHFTNNAPFWNASEPTNIKDVRSNFFPTLQPPFPTPNFDVQSKNICEVRESTGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSPGKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0535 442 Gene3D - 332 392 IPR036638 GO:0046983
Dere08g0535 442 CDD bHLH_AtbHLH_like 328 379 IPR045239 -
Dere08g0535 442 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 104 423 - -
Dere08g0535 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
Dere08g0535 442 SMART finulus 333 377 IPR011598 GO:0046983
Dere08g0535 442 MobiDBLite consensus disorder prediction 307 329 - -
Dere08g0535 442 MobiDBLite consensus disorder prediction 50 66 - -
Dere08g0535 442 MobiDBLite consensus disorder prediction 1 39 - -
Dere08g0535 442 FunFam Transcription factor bHLH123 family 332 394 - -
Dere08g0535 442 MobiDBLite consensus disorder prediction 1 76 - -
Dere08g0535 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 389 IPR036638 GO:0046983
Dere08g0535 442 MobiDBLite consensus disorder prediction 386 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0535 Dere-ChrDere08 8250446 8252458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0535 140 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 51.242 6.30e-80 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0535 08 8250446 8252458 Dere08g0535 08 8250446 8252458 ECH