Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0533 ATGATGAAGGGTGCCCAGAAGTTTTACCGAGGAGGGCCATGGAATGGCCTGCGTCCTACTGAGGCAGATGGTAAGCGCAAGAAGAAGAAGGTGGTGGTCGTGGTGGCAGCAATAGTAGCTGTTTCTGTAGCTTTAGTTGCTGCTACATTCATACTTGGGTGGTGTTATACCCTAAAAGTAGGCAAAAACAAGAAAGACTGCAGCATTAAAGGAGATCAGAACAATGAGAGCCAAGTGGATGATATGGATCTGCCATTCTTTGACCTCTTATCAATTGCTGCTGCTACTAGCAACTTTACTATCAACAACAAAATTGGAGAAGGGGGCTTTGGACCTGTTTACAGGGGAAAACTGACAGATGGGATAGAAATTGCTGTGAAGAGGCTTTCAACAAGCTCAGGACAAGGATTAACTGAGTTCAAGAATGAAGTAAAACTGATTGCCAAACTTCAACACCGCAATCTTGTAAGGCTCCTTGGCTGCTGCCTTCAAGGGGAGGAGAAAATGTTGGTTTATGAATATATGCCTAATAGTAGCCTGGACTCCTTCATTTTTGATCAGAACAAAAGTAAATTACTAGATTGGTCAACGCGCTTCCGAATTATCTTAGGAATTGCTAGGGGGCTTATCTATCTTCATCAGGATTCCAGACTAAGGATCATCCATAGAGATCTCAAAGCAAGTAATGTCTTACTTGATGAGGAGATGAATCCAAAAATTTCAGATTTTGGTATGGCTAGAATTTTTGGAGATCAGAATGAAGAAAACACAAAAAGAATAGTTGGGACTTATGGTTATATGGCACCAGAGTATGCAACTGATGGATTATTTTCAGTGAAATCTGATGTCTTTAGCTATGGTGTCTTGGTGCTAGAGATATTATCTGGGAAAAGAAGCAGAGGATATTATAATCCAAATCACAGCCACAACCTCATTGGTCATGCATGGAAATTGTGGAAAGAAGGCAGACCAATAGAACTGATTGATACAAGCCTTCAAGACTCATGCTTCCTATCACAAATATTGCATTGCATTCATGTTAGTCTCCTGTGTGTTCAACAGCATCCAGAGGATAGACCAGGAATGTCATGTGCCCTACTAATGTTGTTGAGCGAAATCGAATTGCCTGAGCCTAAACAGCCAGGTTACTTTGGGAATACTTCTGTGGAAGCAGATTCCTTTGCAGGAAAGAAGGAATTGAGCTCAACAAATGAAATTACCATTACCCTAATAGAACCTCGATAA 1245 0.4112 MMKGAQKFYRGGPWNGLRPTEADGKRKKKKVVVVVAAIVAVSVALVAATFILGWCYTLKVGKNKKDCSIKGDQNNESQVDDMDLPFFDLLSIAAATSNFTINNKIGEGGFGPVYRGKLTDGIEIAVKRLSTSSGQGLTEFKNEVKLIAKLQHRNLVRLLGCCLQGEEKMLVYEYMPNSSLDSFIFDQNKSKLLDWSTRFRIILGIARGLIYLHQDSRLRIIHRDLKASNVLLDEEMNPKISDFGMARIFGDQNEENTKRIVGTYGYMAPEYATDGLFSVKSDVFSYGVLVLEILSGKRSRGYYNPNHSHNLIGHAWKLWKEGRPIELIDTSLQDSCFLSQILHCIHVSLLCVQQHPEDRPGMSCALLMLLSEIELPEPKQPGYFGNTSVEADSFAGKKELSSTNEITITLIEPR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0533 414 Gene3D Phosphorylase Kinase; domain 1 60 174 - -
Dere08g0533 414 SMART serkin_6 99 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0533 414 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 63 174 - -
Dere08g0533 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Dere08g0533 414 Pfam Protein tyrosine and serine/threonine kinase 100 362 IPR001245 GO:0004672|GO:0006468
Dere08g0533 414 Pfam Domain of unknown function (DUF3403) 373 414 IPR021820 GO:0004674
Dere08g0533 414 Gene3D Transferase(Phosphotransferase) domain 1 175 378 - -
Dere08g0533 414 ProSiteProfiles Protein kinase domain profile. 99 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0533 414 SUPERFAMILY Protein kinase-like (PK-like) 82 369 IPR011009 -
Dere08g0533 414 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 413 - -
Dere08g0533 414 CDD STKc_IRAK 105 369 - -
Dere08g0533 414 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 175 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0533 Dere-ChrDere08 8235715 8238771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0533 32 383 Receptor kinase-like Gene Family AT4G23230 56.215 1.19e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere08g0533 PK_Tyr_Ser-Thr 1.3e-50 CL0016