Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0484 ATGGCCACCGCAGAGCAAGACAACTCACGTGCGTCGCGCATGCACGACGACCACCGCACGACAGATGACGACGAAGACTACAGCGTTACGGACAGCTTGGACGAGAGGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGAAGAGAACAACGGAAAAGACAAGGAAGTAGGGTGGTGCTGGTGGAGAAGCAAGGGTGTGGGAGGAGAGTGCGGTTATGGAGGGAGGGTGTTGGACCCGAGGGCCAAATGGGTTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCGACGGGGCTGTTCGTGGACCCGCTCTTCTTCTACGCCCTCTCCATAAGCGACACGTGTATGTGCCTCTTCGTCGACGGGTGGTTCGCCGTCACCGTCACGGTGCTCCGCTGCATGACCGACGCCTTGCACCTCTGGAACATGTGGTTGCAGCTCAAAATGGCCAAGCGTCCCTTTGGAAGTGGGCTCACTGCAGACCCTAGCCGTCGCTCGGCGGCTCTTCGCTATCTCAAGGCCAAGACAGGCTTCTTCTTCGACCTCCTCGTCATTCTCCCTCTACCTCAGATTGTACTATGGGTTGCAATACCATCTCTATTGGAGAAGGGTTCAGTGACATTGGTGATGACAGTGTTTTTAATAATGTTCCTCTTCCAATATCTTCCAAAGATATATCACTCTGTTTGCCTCTTGCGTCGCATGCAAAACCTCTCCGGCTACATTTTTGGGACAGTCTGGTGGGGCATTGCCCTTAACATGATAGCCTATTTCGTCGCTTCCCATGCAGCAGGGGCATGCTGGTACTTGCTGGGGATTCAAAGGGCAAGTAAGTGCCTGAAAGAGCAATGTGGGAAAACAAGTGGTTGTGGCCTGAGAACACTGTCATGTAAGGAACCTATATACTATGGAACGAGTGGGATGGTGAGTGAAAGAGCAAGACTGGCATGGGCAGAGAACAGGCAAGTTAGGTCGACGTGCTTGGATAGTTCTGATAACTACAACTATGGAGCTTATAAATGGACTGTTCAGCTCGTCACAAACGATAGCAGACTCGAAAAGATACTCTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTCGGGAACCTCGAGAGTACAACAGAATGGCTGGAAGTTGTTTTCAACATCATCGTTTTGACCAGTGGCCTTCTTCTCGTCACCATGTTGATCGGAAACATCAAGGTGTTCCTGCACGCGACAACATCGAAGAAGCAAGCGATGCAATTGAAGATGAGGAACATAGAATGGTGGATGAGGAAAAGGCGCTTGCCTGTAGGGTTCCGGCAGCGCGTGCGTAACTACGAACGGCAGCGATGGGCAGCGATGCGTGGGGTCGACGAATTCGAGATGATCCGAAATCTCCCCGAGGGCCTCCGACGAGACATCAAGTACTACCTCTGTTTGGATTTGGTCCGACAGGTGCCGCTATTTCAGCACATGGATGAATTGGTGCTAGAGAACATCTGCGACCGCGTGAAGTCCCTCATATTCACAAAGGGAGAAACAATAACCAAAGAGGGAGACCCCGTGCAGAGAATGCTATTCGTAGTGAGGGGTCACCTTCAGAGCAGCCAATTCCTGCGCGACGGCGTCAAGAGTTGCTGCATGTTAGGTCCCGGAAACTTCAGCGGCGACGAGCTTCTCTCATGGTGTCTCAGAAGGCCCTTCATAGAACGCTTACCGCCGTCATCGTCTACCCTTATCACCCTCGAAACGACGGAGGCGTTTGGGCTCGAAGCACAGGACGTCAAGTACGTGACGCAGCACTTCCGATACACCTTCATGAACGACAAGGTGAAGAGGAGCGCCAGGTACTACTCGCCGGGATGGAGAACTTGGGCTGCCGTCGCCATCCAGCTTGCGTGGAGGAGGTATAAGCATCGTTTGACCTTGACGTCGTTGTCGTTTATACGGCCAAGAAGGCCTGTGTCCCGATGCTCTTCCCTTGGGGAGGACAGGCTTCGCCTCTATACTGCGTTGTTGACTTCGCCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2049 0.5276 MATAEQDNSRASRMHDDHRTTDDDEDYSVTDSLDEREEEEEEEEDEEENNGKDKEVGWCWWRSKGVGGECGYGGRVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFVDGWFAVTVTVLRCMTDALHLWNMWLQLKMAKRPFGSGLTADPSRRSAALRYLKAKTGFFFDLLVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRASKCLKEQCGKTSGCGLRTLSCKEPIYYGTSGMVSERARLAWAENRQVRSTCLDSSDNYNYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPVGFRQRVRNYERQRWAAMRGVDEFEMIRNLPEGLRRDIKYYLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITKEGDPVQRMLFVVRGHLQSSQFLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAQDVKYVTQHFRYTFMNDKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0484 682 MobiDBLite consensus disorder prediction 1 52 - -
Dere08g0484 682 Gene3D Helix hairpin bin 410 476 - -
Dere08g0484 682 Gene3D Jelly Rolls 483 601 IPR014710 -
Dere08g0484 682 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Dere08g0484 682 FunFam cyclic nucleotide-gated ion channel 4 483 601 - -
Dere08g0484 682 Coils Coil 29 55 - -
Dere08g0484 682 CDD CAP_ED 485 591 IPR000595 -
Dere08g0484 682 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 47 647 - -
Dere08g0484 682 MobiDBLite consensus disorder prediction 27 50 - -
Dere08g0484 682 MobiDBLite consensus disorder prediction 9 26 - -
Dere08g0484 682 ProSiteProfiles cAMP/cGMP binding motif profile. 485 595 IPR000595 -
Dere08g0484 682 SUPERFAMILY Voltage-gated potassium channels 79 406 - -
Dere08g0484 682 SUPERFAMILY cAMP-binding domain-like 411 599 IPR018490 -
Dere08g0484 682 Pfam Ion transport protein 87 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0484 Dere-ChrDere08 7370163 7375929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0484 74 681 Ion Channels AT5G54250 81.524 0.0 1040