Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0483 ATGATGTTATCACCTACGCCATCGGCCATAGCGAGGAGCTCGCTGGAAGAAATGCTTGAATCAATCCGGCGGAGAGGAGAAGAAGAGAAGCCGAAAGACTTGCCTCCGGCATTGCCAGCTCGTCCGACCTCGAGAGCTCGGCTTCCCTCGGCAAGACGGTCGTTGCCGCATAAGTTTAGGATTGGAGGTGATCATGAAGCAACAGAAAGCTCACAGAATAATTTCAAAGCAAATGTAAAGGAAGAGACCGAGAAGAAAGATGGGGATACGGGACATAAAAGAAAAGGTAGTTTTGGGGGTAAGAAGATGATGCAGGACATTGAATCGCCGTATATCGTGACATCGGAAGAGAATATGAGTCAACCATCATCAGAGGACCCTGGTGCGTCATCTACTGCTTCCGCAGCTACAGGAGGAAAGATTCAGGAATTGAATTGTGATGGCAACGTTGCTTATTACATAAAAAAGGTAACCGAGCAGAAAGTGCTGGCTATAATGGTTGATTATATCAGTAAAAAGTCACCAAGAGGACAGTGGGGACTCGGACAGATACAGTCAACTTCAGGGGAGGAAGCTTTTGTTTTGCTCTCAGATGGAGATGTTACAAAAGTGGCAAGATCAGAGCTTTTACCAGCTAATCCAGATATTCTACAGGGTGTGGATGATCTTATTCAGCTTAGTTACTTGAATGAGCCCTCAGTTCTTCATAATCTCCAGTTTAGATATTCTCAGGACATGATTTATAGTAAAGCTGGACCTGTTTTGATTGCAATCAACCCCTTCAAAAATGTCCACATATATGGAAATGATTATGTCTCAGCTTATAGGCAGAAGACTATGGATTGCTCTCACGTTTATGCTATAGCAGATGTGGCTTATAGTGAGATGATGAGAGATGAAGTAAACCAGTCCATTATTATAAGTGGTGAGAGTGGATCTGGGAAGACAGAGACTGCAAAATTTGCTATGCAATACTTAGCTGCTCTAGGTGGTGGCAGTTGCGGAATAGAAAATGAAGTCCTTCAGACAAATTGTATACTAGAAGCTTTTGGGAATGCGAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCATGTTGGGGAAGATATGTGGGGCCAAAATTCAAACCTAGCAGTCGAGAGTTGTACAACTGGCAAGTGGTGAGAGGTCGTATCACATCTTTTATCAACTTTGTGCTGGTTCTTCACCTGATCTTAAAGAGAGACTGAATGTTAAAGCTGCCAGTGATTATAAATATCTCAATCAGAGTGACTGCATGACAATTGATGGTGTTAATGATGCTCACAAATTTCAAAAGCTGATGAAAGCACTGGATGATGTTCGAATTTCCAAAGAGGATCAAGAGCTAGTCTTTAAGATGATTGCTGCAATACTATGGCTGGGAAATATATCATTCCGAGTAACTGACTATGAAAATCACGTTGAGGTTGTAGATGATGATGCTGTAACCAGTGCTGCCCTGCTGATGGGTTGCAGTTCCGAGGAGTTAAGGGTAACTTTATCTACTCGAAAAATCCAAGCTGGCAAAGATACTATTGCCAAAAGGTTGACGTTGTGGCAGGCAACTGACACAAGAGATGGATTGGCAAAATTCATATACGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAATGCACTTGAAGTGGGTAAACGATGTACGGGGAGATCTATAAATATCCTCGATATCTATGGGTTTGAGTCATTCCAGAAAAACAGCTTTGAACAGCTTTGTATAAATTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAACTTGAGCAGGAAGATTATGAATTGGATGGCGTTGATTGGACAAGAGTAGATTTTGAGGACAATCAAGAGTGCTTGGATCTTTTTGAGAAGAAACCTCTGGGGCTGATCTCTCTGTTGGATGAGGAATCAAATTTCCCCAGGGCCACTGATCTAACACTTGCCAACAAACTTAGACAGCACCTAAGTACTAATCCTTGCTTTAAAGGGGAAAGAGGCACAGCTTTCCGCGTTTGTCACTATGCAGGGGAGGTTTCATATGATACAAATGGATTTCTAGAAAAGAACAGAGATCCGCTTCCTTCTGATTCCATCCAACTCCTGTCATCATGTAGTTGTCAACTACTGCATTTGTTCTCCAAAATGCTTGATCAGTCTCAAAAGCAATCAAATTCCTCCAACATAGGTGCACTAGGTTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTATTCAAGTTGATGCATCAATTGGAGAGCACCACACCTCACTTTATTCGCTGCATAAAGCCAAACACTAAGCACCTGGCCGGCATATACGATGAGGACCTTGTCTTACAACAACTCAGGTGTTGTGGAGTTTTGGAGGTTGTTAGAATTTCGAGGGCTGGATATCCTACTCGAATGATGCATCAAGAGTTTGCCAGAAGGTATGGGTTTCTGCTTTCTGAGGCCAACATATCTCAGGATCCATTAAGCATCTCAGTTTCCATTTTGCAACAATTTAATATCCCTCCTGAAATGTACCAAGTTGGCTACACAAAACTGTATCTTCGAACAGGGCAGATTGGTGCACTGGAGGATAGGAGGAGACAGGTTATGATGGGAATATATGGGGTTCAAAAATGGTTTCGTTGTCATCAAGCTCGCCGAAATTTTAATGGGCTTAAGAATGGTGCAATAACATTACAATCATTTGTTCGTGGAGAGATTGCGAGAAAGAAATATAGTGCTATGGTGAAGTCTTCTGCACTTATTGCTTCTGAAAAGCTTCAGCAGACCCGGGCAATCACACGACTACAATCTGTAGTTCGTGGGTGGCTGGTTCGAAGGCGTGCTGGTGGCATGCATAAGTTGAAGAAAGATACTAAAAATGCTAAACCTAAGCGAAAGTCACGTTCTAAGATGTCAGGAGTGAAGGATGTGTCCAAGGAGCAGCTTCAGAATCTGCCTTCAGCTATAGAAGAACTCCAAAACCGAGTCCTCAAAGCTGAAGCAACTCTGGAGCAAAAGGAAGAGGAAAATACTGCATTGAGAGAACAACTAAAACAATTCGAGACAAGGTGGATTGAGTATGAGATGAAGATGAAATCAATGGAACAGATGTGGCAAAAACAGATGGCATCTTTGCAATGGAGTCTTTCTGCTGCCAGAAGGAGCCTTGCTGCTGAAAATTCAACTGGTCAACCTGGAAGAAATGATGCTGCGTCTCCTTGCTACTATGACTCTGAGGACGCGACTTCTGTGGAATCTCGAACACCCAGTGGCAGCACACCTATCAAATTGCCTAGTACTCATTTTGAGATTGGAGTAAGGAGAGAGGCTAATGGTACTTTGAATGCAGTCAGCAATCTGACAAAGGAATTTGAGCAGCAGAGACAGACCTTTGATGATGATGCCAAAGCTCTGCTAGAGGTTAGATCAGGGCACTCAGCTAACATGAATCCTAATGAAGAACTTCGGAAGCTTAAACAGAGATTTGAGGGATGGAAGAAAGAATACAAGGGTAGATTACGGGGGACAAAAGTTAAGCTTAATAAGGCAGTGAGTCCGGAAGTGGAAATTAGTTGTCAAAAATGGTGGGGGAAGATAAGCTCAAGAGGTTTGTAG 3672 0.4257 MMLSPTPSAIARSSLEEMLESIRRRGEEEKPKDLPPALPARPTSRARLPSARRSLPHKFRIGGDHEATESSQNNFKANVKEETEKKDGDTGHKRKGSFGGKKMMQDIESPYIVTSEENMSQPSSEDPGASSTASAATGGKIQELNCDGNVAYYIKKVTEQKVLAIMVDYISKKSPRGQWGLGQIQSTSGEEAFVLLSDGDVTKVARSELLPANPDILQGVDDLIQLSYLNEPSVLHNLQFRYSQDMIYSKAGPVLIAINPFKNVHIYGNDYVSAYRQKTMDCSHVYAIADVAYSEMMRDEVNQSIIISGESGSGKTETAKFAMQYLAALGGGSCGIENEVLQTNCILEAFGNAKTSRNDNSSRFGKLIEIHFSMLGKICGAKIQTXQSRVVQLASGERSYHIFYQLCAGSSPDLKERLNVKAASDYKYLNQSDCMTIDGVNDAHKFQKLMKALDDVRISKEDQELVFKMIAAILWLGNISFRVTDYENHVEVVDDDAVTSAALLMGCSSEELRVTLSTRKIQAGKDTIAKRLTLWQATDTRDGLAKFIYASLFDWLVEQVNNALEVGKRCTGRSINILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQEDYELDGVDWTRVDFEDNQECLDLFEKKPLGLISLLDEESNFPRATDLTLANKLRQHLSTNPCFKGERGTAFRVCHYAGEVSYDTNGFLEKNRDPLPSDSIQLLSSCSCQLLHLFSKMLDQSQKQSNSSNIGALGSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKHLAGIYDEDLVLQQLRCCGVLEVVRISRAGYPTRMMHQEFARRYGFLLSEANISQDPLSISVSILQQFNIPPEMYQVGYTKLYLRTGQIGALEDRRRQVMMGIYGVQKWFRCHQARRNFNGLKNGAITLQSFVRGEIARKKYSAMVKSSALIASEKLQQTRAITRLQSVVRGWLVRRRAGGMHKLKKDTKNAKPKRKSRSKMSGVKDVSKEQLQNLPSAIEELQNRVLKAEATLEQKEEENTALREQLKQFETRWIEYEMKMKSMEQMWQKQMASLQWSLSAARRSLAAENSTGQPGRNDAASPCYYDSEDATSVESRTPSGSTPIKLPSTHFEIGVRREANGTLNAVSNLTKEFEQQRQTFDDDAKALLEVRSGHSANMNPNEELRKLKQRFEGWKKEYKGRLRGTKVKLNKAVSPEVEISCQKWWGKISSRGL 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0483 1223 Gene3D - 893 939 - -
Dere08g0483 1223 Gene3D - 586 775 - -
Dere08g0483 1223 CDD MYSc_Myo8 232 873 IPR036022 -
Dere08g0483 1223 Gene3D Myosin VI head, motor domain, U50 subdomain 455 563 - -
Dere08g0483 1223 Gene3D Kinesin motor domain 217 818 IPR036961 -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 1098 1116 - -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 971 988 - -
Dere08g0483 1223 ProSiteProfiles IQ motif profile. 947 976 IPR000048 GO:0005515
Dere08g0483 1223 SMART MYSc_2a 212 886 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 FunFam Myosin IE heavy chain 455 563 - -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 17 35 - -
Dere08g0483 1223 Pfam Myosin head (motor domain) 220 873 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 MobiDBLite consensus disorder prediction 78 101 - -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 1075 1117 - -
Dere08g0483 1223 FunFam Myosin heavy chain 398 454 - -
Dere08g0483 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 934 IPR027417 -
Dere08g0483 1223 SMART iq_5 946 968 IPR000048 GO:0005515
Dere08g0483 1223 SMART iq_5 909 931 IPR000048 GO:0005515
Dere08g0483 1223 SMART iq_5 883 908 IPR000048 GO:0005515
Dere08g0483 1223 FunFam Unconventional myosin-XIX 586 775 - -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 1 136 - -
Dere08g0483 1223 ProSiteProfiles Myosin motor domain profile. 218 885 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 Pfam IQ calmodulin-binding motif 948 966 IPR000048 GO:0005515
Dere08g0483 1223 Pfam IQ calmodulin-binding motif 913 930 IPR000048 GO:0005515
Dere08g0483 1223 PANTHER MYOSIN 211 1210 - -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 111 136 - -
Dere08g0483 1223 Gene3D - 398 454 - -
Dere08g0483 1223 ProSiteProfiles IQ motif profile. 910 938 IPR000048 GO:0005515
Dere08g0483 1223 Coils Coil 1001 1042 - -
Dere08g0483 1223 MobiDBLite consensus disorder prediction 971 996 - -
Dere08g0483 1223 PRINTS Myosin heavy chain signature 574 602 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 PRINTS Myosin heavy chain signature 627 655 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 PRINTS Myosin heavy chain signature 345 372 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 PRINTS Myosin heavy chain signature 302 327 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 PRINTS Myosin heavy chain signature 248 267 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere08g0483 1223 Gene3D - 819 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0483 Dere-ChrDere08 7323607 7335132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0483 1 1217 Myosins gene family AT5G54280 61.798 0.0 1522