Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0481 ATGAACCAGAAGGCTAACGTGTCTAAGGAACTCAACGCCAAGCACAAAAAGATACTTGAAGGACTTCTTAAATTACCAGAAAATAGGGAGTGTGCCGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAACCTAGGCATCTTTATATGCATGCAGTGCTCAGGAATACATAGAAGTTTGGGGGTACATATATCAAAGGTGCGGTCTGCGGCATTGGACACTTGGCTTCCAGAGCAGGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAGCTACCCCCAAATTATGATAGAGTTGGAATCGAGAATTTCATACGCGCAAAGTATGAAGACAAGAGATGGATTGCAAGGGATGGAAAACCAAAATCACCTTCTATACTGCAGGGAGACAAGGCTTCTTCACATTGGCAGAGGTCTGCAGAAAGAAATGGGCATGGTTCATATGCATCTGCTTCTGAGAATACTATTGATGAAAGGAAGAAAACTCAACCATCAAGTACAATTCATGCTACTAGATTTAGTGTTCCTGCTCCCCCTAAAGGACCTGAGCTGGTAACACCTGTTACAAAACCTCATGCCGAGAAAGTGGAAGAAGTTGTACCACAACCTCAAGCTGAGACAACAAAGCAGGCTGCTGATATGGCTCAGAGTACCCCTGCAAAAGTTGACTATGCGACAGATCTTTTTGACATGTTGTCTATGGATAGCCCTAGTGAAAATGGCTCAGAGGCTGCTGGTGCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGTAGAGGCATCAACAGCTGAGAAGACTGGTCCATCAAAAGCAGTTGAGAGTACTCAGTCTGCTTCTGGAATTGAGGATCTATTTAAAGCGGCTGCAGAGGCATCGACAGCTGAGAAGACTGTTCCCACAAAAACAGTTGAGAGTACTCAGTCTGCTTCTGGAATTGAGGATCTATTTAAAGATTCAACTTCACAATCAGTGATGCCAAGCTTAGTTCAAGAAAAACCACAAAAGGATGTAAAAAATGATATCATGAGCCTGTTTGAGAGGTCCAATATGGTGTCTCCTTTTTCAATGCATCAACAACAGCTTGCCATGCTAGCACAGCAACAGTCCCTTCTAATGGCTGCTGCAGCTAAATCTGCTGGGGGGGACCCCAAGAATCTTGGTAGTTTACAACAATCTGGGCTGAAGGGGTCAAGTATTCCTGTCCAAACTTGGCCAGCTGTTGGCTACCAAACTCCTGGAGTTGTGCCTGTGCCCGGTCAGGCAGAGCTGCTGAAACTCATGCAGACTGGGAACATGACTCCTGGACAACCAGCAGGGAGTGCTGTTCAGTTTCCATCTTGTTTTTATATGATGGGACAAGTTTCTCCAGTTAATGATACAGTGACAACCGGCGTTAGTAAACCTCAGTCTGCAGCTCCAGCATCATCAACCTCCTCAGAGCCGTCCGCGAAGGACTATGATTTTTCCTCTTTAACACAAGGGATGTTTGCAAAACATTGA 1533 0.4494 MNQKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSAALDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWIARDGKPKSPSILQGDKASSHWQRSAERNGHGSYASASENTIDERKKTQPSSTIHATRFSVPAPPKGPELVTPVTKPHAEKVEEVVPQPQAETTKQAADMAQSTPAKVDYATDLFDMLSMDSPSENGSEAAGATADDNNWAGFQSAVEASTAEKTGPSKAVESTQSASGIEDLFKAAAEASTAEKTVPTKTVESTQSASGIEDLFKDSTSQSVMPSLVQEKPQKDVKNDIMSLFERSNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSAGGDPKNLGSLQQSGLKGSSIPVQTWPAVGYQTPGVVPVPGQAELLKLMQTGNMTPGQPAGSAVQFPSCFYMMGQVSPVNDTVTTGVSKPQSAAPASSTSSEPSAKDYDFSSLTQGMFAKH 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0481 510 CDD ArfGap 19 117 - -
Dere08g0481 510 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Dere08g0481 510 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Dere08g0481 510 MobiDBLite consensus disorder prediction 126 226 - -
Dere08g0481 510 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Dere08g0481 510 MobiDBLite consensus disorder prediction 270 289 - -
Dere08g0481 510 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Dere08g0481 510 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Dere08g0481 510 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Dere08g0481 510 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 301 IPR044520 GO:0005096
Dere08g0481 510 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Dere08g0481 510 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Dere08g0481 510 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Dere08g0481 510 MobiDBLite consensus disorder prediction 135 161 - -
Dere08g0481 510 MobiDBLite consensus disorder prediction 471 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0481 Dere-ChrDere08 7304628 7310584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0481 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 3.29e-29 116