Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0443 ATGGAACCTGCATGCTTAGACTTGAATGATGAAGACTCTATAAAGCAAAACTCGAAATCTATTTTTGCAAATCAAGAAATCTCTGATAGTGACAATGGTTGCTTTAATTGCATTATTTGCTTGGAATCACCGCACGACCCTGTGGTCACTCTTTGTGGTCATGTGTACTGCTGGCCATGCATTTACGGTTGGCTTCAAGTCCAGAGCTCCTCTGATGAATCAAACCAGCAGCCGACTTGCCCAATTTGTAAAGCCAACATCTCTCATGCTTCATTAATCCCCCTTTATGGCCGTAGAACAACTAATCCAGATTCTGAATCCAAGAAACCCCACATGGATATGAGAATACCTTGCAGGCCACCTCCCTATAGCTCAAATTCATTTACTTCTCATTCAGGTCAACAAGTCCATCCAAATTTTCATCATCAGCATTACTTCCCTCATCTTAATGGAGACTATGCAGAAAATGGATCACCTTCTCTTAGGGGTGTGGCTATGTCTAGTTTCTTTGCTCCAATGATCGGTATGTTGGGGGATCTGATCTTCTCGAGGACTTTTGGGAGCTCAAGTGCAAATTTGTTTTCTTACCCTTATCTAATTTCTCATCTGCATGATGGAAGTGGCGGTCCTATGAGGAGAAGACAGGATATGCAGATTGACAAGTCTCTCAGTAGAGTTATGTGA 684 0.4225 MEPACLDLNDEDSIKQNSKSIFANQEISDSDNGCFNCIICLESPHDPVVTLCGHVYCWPCIYGWLQVQSSSDESNQQPTCPICKANISHASLIPLYGRRTTNPDSESKKPHMDMRIPCRPPPYSSNSFTSHSGQQVHPNFHHQHYFPHLNGDYAENGSPSLRGVAMSSFFAPMIGMLGDLIFSRTFGSSSANLFSYPYLISHLHDGSGGPMRRRQDMQIDKSLSRVM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0443 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Dere08g0443 227 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Dere08g0443 227 SMART ring_2 37 83 IPR001841 -
Dere08g0443 227 SUPERFAMILY RING/U-box 33 96 - -
Dere08g0443 227 Pfam RING-type zinc-finger 37 81 IPR027370 -
Dere08g0443 227 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Dere08g0443 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0443 Dere-ChrDere08 6922873 6923691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0443 31 226 C3H Transcription Factor Family AT4G27470 41.827 1.07e-46 153