Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0438 ATGGAGTCTCGGTTGATGAGCCGGAGAAGCTTTGTCCGGCCAACAGTTTCGCCGGCGTTTGCTGAACCCAACCACTTCTTGAAGATTATACTTCCCGAACCCATTCATGGCGAAGAAATGCGAATTCCAAAGGAATTTGTAAAAAGATTTGAGAGTGAACTATCTAGTGAGGCAACAATTACTGTTCCAGACGGTCTTGTATGGAAAGTGCAATTGAAGAAATCTGTGAACGAGGTTTGGTTTTGCAAAGGTTGGCGCGAATTTGTTAAATACTACTCCATTGGTTTTGGCTCCTTTTTAGTGTTCAAATACGAGGGCAATTCAAATTTTTGTGTGGTCATCTTTGATATGAGTGCTGCTGAGATTTATTATCCATGTAAGAATCAGAGCAACAATGAAGAAACTAACATTGAAAAGGAGCATTCGGAATCTGAATGTCTTAAGATAGGGTCCAGCCTTGATCATTGTAGATACAACACAAGAAGCAAAAGGCTTAAGCTGGAAAGTGAAGAAGAAATAATTGATGTAGATAATGTGAATGCACTGAGTGATGGCAAATTAGAAAATAATGTGAATAATAATTCTCTTCGGCATTCAACAAAATATGGGAAAGATAAAACTATGCAGGAATCTTCTTCCAAAATGGATAGTGTGTTGAGAAAAAAGCAAAGGGCTATAGAAGCTGCTCTGAAGTTCAATCCAACAAAACCATATTTTACTGCAATAGTACAACCATCTCATATGACTCGATGGTATATGGATGTGCCAGCTTTATTTTCCAGAACATATATGAGAAAACTTAATTCTATAAAGCTACAAGATTGTAATGGGCAACAATGGGTGGTATATCGTCGTAAACATCGTCTCTCGATTTTTCGAATAGGGAGGGGTTGGATTAATTTCGCAAGGGCCAACAATTTGAAGGTAGGAGATGTTTGTGTGTTTGAGCTTATCAAGAGGAAGAATATTGTACTAAAAGTTAGCATATTTGCCTGA 996 0.3795 MESRLMSRRSFVRPTVSPAFAEPNHFLKIILPEPIHGEEMRIPKEFVKRFESELSSEATITVPDGLVWKVQLKKSVNEVWFCKGWREFVKYYSIGFGSFLVFKYEGNSNFCVVIFDMSAAEIYYPCKNQSNNEETNIEKEHSESECLKIGSSLDHCRYNTRSKRLKLESEEEIIDVDNVNALSDGKLENNVNNNSLRHSTKYGKDKTMQESSSKMDSVLRKKQRAIEAALKFNPTKPYFTAIVQPSHMTRWYMDVPALFSRTYMRKLNSIKLQDCNGQQWVVYRRKHRLSIFRIGRGWINFARANNLKVGDVCVFELIKRKNIVLKVSIFA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0438 331 CDD B3_DNA 237 330 IPR003340 GO:0003677
Dere08g0438 331 MobiDBLite consensus disorder prediction 199 216 - -
Dere08g0438 331 PANTHER B3 DOMAIN-CONTAINING 22 322 - -
Dere08g0438 331 Gene3D - 19 120 IPR015300 -
Dere08g0438 331 Gene3D - 218 331 IPR015300 -
Dere08g0438 331 MobiDBLite consensus disorder prediction 193 216 - -
Dere08g0438 331 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Dere08g0438 331 SMART B3_2 26 118 IPR003340 GO:0003677
Dere08g0438 331 SMART B3_2 238 331 IPR003340 GO:0003677
Dere08g0438 331 SUPERFAMILY DNA-binding pseudobarrel domain 23 118 IPR015300 -
Dere08g0438 331 CDD B3_DNA 25 116 IPR003340 GO:0003677
Dere08g0438 331 Pfam B3 DNA binding domain 27 116 IPR003340 GO:0003677
Dere08g0438 331 Pfam B3 DNA binding domain 239 330 IPR003340 GO:0003677
Dere08g0438 331 SUPERFAMILY DNA-binding pseudobarrel domain 232 330 IPR015300 -
Dere08g0438 331 ProSiteProfiles B3 DNA-binding domain profile. 238 331 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0438 Dere-ChrDere08 6844077 6846064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0438 26 330 B3 DNA Binding Superfamily AT3G18990 31.024 7.26e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere08g0438 B3 1.2e-13 CL0405