Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0436 ATGGCGGATCATCTCAGAGATTCGGCTCCTGCCGTCGGATCAAAAGCCGACGTGGGGAATATCCTTCAGACGTATCGATACACCATCACGTTCGATCTTCCAACCTCGATCGTCGTCGGCTTCTCTCTCACACTCTTCTTCTGCATCCTCTACCACGTCCTCTTCAGCTTGTTCTACTGGCTCATCGGTACGAGGATTTACTACCAGCGCGACGTCGAAGAAGGCATAACAACCTTAACGGCCGGTCCAGCCGGCGTGGACGATCCGTCGCTGTCGCACCAGGTGGCGATATTTGAGGCTCTGGTACACAGCAACCTGCAGGCGTGGCTGATGGTGGGGGCGATAATGGAGGAAACGGAGGGAGAGGATGAGAAGAGAGGGGAAACCCTAAGGGCCACGAAGAAACTGCCTGGTCTGGTGAAGTATGGGAGCCAACAAGAAGAGAGTGAGATGATGAGAAACAGTGGGGATTGTGCGATTTGCTTGGAGGATTTTAAGGTTGGAGAGTTGTGTCAGGTTTTTCCAGTGTGCAATCATGTGTTTCATTCGAATTGCATAGATTGCTGGTTGGCCAGCAAGCTTACGTGCCCAACATGTCGGAGTTACATTATGGATTTGGATTGA 624 0.5176 MADHLRDSAPAVGSKADVGNILQTYRYTITFDLPTSIVVGFSLTLFFCILYHVLFSLFYWLIGTRIYYQRDVEEGITTLTAGPAGVDDPSLSHQVAIFEALVHSNLQAWLMVGAIMEETEGEDEKRGETLRATKKLPGLVKYGSQQEESEMMRNSGDCAICLEDFKVGELCQVFPVCNHVFHSNCIDCWLASKLTCPTCRSYIMDLD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0436 207 SMART ring_2 158 199 IPR001841 -
Dere08g0436 207 PANTHER RING FINGER DOMAIN-CONTAINING 44 202 - -
Dere08g0436 207 SUPERFAMILY RING/U-box 157 204 - -
Dere08g0436 207 CDD RING-H2_PA-TM-RING 157 200 - -
Dere08g0436 207 Pfam Ring finger domain 157 200 IPR001841 -
Dere08g0436 207 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Dere08g0436 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0436 Dere-ChrDere08 6837491 6838114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0436 113 201 C3H Transcription Factor Family AT1G53010 43.956 7.16e-20 81.3