Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0435 ATGAACAACGACAACAATGGGGTCCTTCGAGCAATCGACACAGCCCCACCGCCTTTCCCTCCGAGGTTGTACTGCATTTTCGCTGTGGGATTCGTATCGTTACTCTTCATGGGTTTCATTGACACTCTGTTCACCATCCTCTTCATCCTCATCGTGGCCCTCTGCTGGTTCGGCCCCAACACTTTCCCACTAGATGACTTTGAGATCGATGACGTCGAGGATTTTGACGTTGAAGTCGGCGACAGACATGCCCAGAATGGAAACCCACTAAATAATGACAGGGTGATGGAAATTTTGGATAAATTTTTCAGGGTTGTGAAGGGAATAGGAAGAAAACAGAGGAAGAAGAATGAACCGAAGAAAGTGCTTGGTTCTATTGAATGCTTCGGAAGCCAAGCAACGGCAGAGTCGGGTTATAGTGTGTGTACGATATGCTTAGAGGATTTCCAGAAAGGGGAAAAATGCCTGGTATTTCCAGTTTGTAGCCATCTTTTTCACTATAAGTGTATTGTTGGTTGGTTGAGGAAGAAGAAGCTGACGTGTCCTGTTTGTCGTTATTGCGTGGCGTCGAAGGCGAAGACAGTTAGAGAAGACAGAAGCAGGTCGTAG 609 0.4647 MNNDNNGVLRAIDTAPPPFPPRLYCIFAVGFVSLLFMGFIDTLFTILFILIVALCWFGPNTFPLDDFEIDDVEDFDVEVGDRHAQNGNPLNNDRVMEILDKFFRVVKGIGRKQRKKNEPKKVLGSIECFGSQATAESGYSVCTICLEDFQKGEKCLVFPVCSHLFHYKCIVGWLRKKKLTCPVCRYCVASKAKTVREDRSRS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0435 202 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 188 IPR044675 -
Dere08g0435 202 SUPERFAMILY RING/U-box 141 191 - -
Dere08g0435 202 ProSiteProfiles Zinc finger RING-type profile. 142 185 IPR001841 -
Dere08g0435 202 CDD RING-H2_PA-TM-RING 141 185 - -
Dere08g0435 202 Pfam Ring finger domain 142 185 IPR001841 -
Dere08g0435 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
Dere08g0435 202 SMART ring_2 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0435 Dere-ChrDere08 6835028 6835636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0435 107 185 C3H Transcription Factor Family AT2G17450 36.709 1.37e-11 59.3