Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0430 ATGGAGGGTTCTTCTGGGTCTGGCTGGCAGAAGTCTGACAGTTCTAGGGCATTAAACACTTCTGGAGTCTCAGACAGGAACTTACGGCTTCTTTGTCCTGAAAAAAACACCATTTCTGGCGAGGCATCACATGATTCTGGGTTTAGAAAGGAAAGAGATAGGATTGTGTTGTCTCAAGGTGATCAGCCTAAACACCTGGGTGGTTTATCTGGGGTTTGTGAAGGTGACGTAGCGGTTGACCCTTTTGTTCATTCTATAGAATATGGTGATATTAGCTTGAGACAATGGTTAGATAAACCTGAACGATCTGTAGATGCCTACGAATACTGGCACATATTCAGGCAAATAGTTGAAATTGTTAATTTAGCACATTCTGAAGGAATTGTTGTTCATAACGTGCGGCCCTCCTGCTTTGTCATGTCATCTTTCAATCACGTCTCCTTCATTGAGTCAGCATCTTGTTCTGATTCTGGCTCAGATTCTCTAGATGGATTAAACAGCCAAGCTGCTGAGATTAAAACTCAACCATCTTTCTGTCCCCGTGGTATGCATCAGAAAAGAAGTTTAGGATGTGATGATATGGTACCCGTCAGGACTTCAACAACGGCTTTGTCAGAATCTAGTTGCATGCTGTCTAGTGCAGTGTATGCAGCGCGTGCATCATTAATAGAAGATACTGAAGAAAATAAAACCAAAGACAGGAGAAAGGGTGAAGATGTAGAAGGAAAGAAGCAAGCTTTTCCTATGAAACAGATACTGGTAATGGAGACGAGTTGGTACACTAGTCCTGAAGAGGTGGCTGGTGCTCCAAGTTCCTGTGCTTCAGACATTTACCGATTGGGGGTTCTCCTATTTGAGCTATTCTGTCCGCTCAGCTCAAGAGAAGAAAAGAGCAGAACCATGTCTAGCCTAAGACATAGAGTTCTCCCTCCACAGTTACTTTTGAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTACTGCATCCTGAGCCTAGTAGTCGTCCAACACTTGGGGAGTTGTTGCAAAGTGAGTTCCTTAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGAGAAAGGATAGAGGAACAAGAGTTGTTACTAGAATTCCTTTTGTTAGTTCAACAGAAGAAACTAGAGGTTGCTGAAAAGTTGCAACATACTCTTTCTTTTCTGTGTTCAGATATTGAAGAAGTGACCAAGCAGCAGGAAAGATTTAAAGAAGTTGCTGGCTCTGAACTAGGGAGCAGCAATCGTTCAGCACTATGCTTCCCTTCCATGACAGGCATTGTTAGTGAGGATTCTGCTTGCTTGGGGACCAGAAAACGAGTCAGACCAAGGCTGCATGTTGACAATACCGAAGAATGTGATGATAACATAGGCGATGATCAGAAAAATTATGGAATTTTTCTTTCGAAAGGTTCCCGGCTAATGAAGAACTTTAAGAAATTAGAGTCAGCATACTTTCTAACACGATGTAGACCAGCCTATTTATCTGGAAAGCCAGTAGTTAGACATTCACCTTTAGCTGTTGACGGTAGAGGGTCTATTGTTGCGTCTGAAAGAAGTTGCATTAATAACATGACATCAAGGGAGCACTGCAGGGACACTAGAAGTGCTTGGATAAATCCTTTCCTTGAGGGTTTGTGCAAATACCTATCATTCAGTAAGCTAAAGGTTAAGGCTGACCTGAAGCAGGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCGCTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCTGGCGTAAACAAGAAAATTAAAGTTTTTGAATGTGACACAATCATTAATGAAGATCGTGATATCCACTATCCGGTAGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGTTTATGTTGGAATACTTATATCAAAAGTCAAATTGCTTCTAGTAACTTTGAAGGTGCTGTACAGTTATGGGATGTGACGAGAAGTCAAGTACTATCTGATATGAAGGAGCATGAGCGGCGGGTGTGGTCAGTTGATTTCTCATCAGTAGACCCAACAATGCTAGCAAGCGGGAGCGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGCACCATCAAAACAAAGGCAAATGTGTGCTGTGTTCAGTTTCCACTGGATTCTGGTCGATTCCTTGCTTTTGGTTCAGCAGATCATCGAATATATTACTATGATCTCCGGAACCTAAAAATGCCTCTGTGTACATTAGTAGGACATAATAAGACTGTGAGCTACATAAAGTTTGTAGACACCATGAACCTTGTCTCTTCATCTACGGACAACTCTTTGAAGCTTTGGGATTTATCAATGTGCACATCTCGAGTCATAGACACACCAATTCAATCATTTACAGGTCACATGAATGTGAAGAACTTTGTGGGGTTGTCTGTATCTGATGGTTATATCGCTACGGGTTCAGAGACAAATGAGGTTTTCATATACCACAAAGCTTTTCCTATGCCAGCATTGTCATTCAAGTTCCACAACACGGACCCACTTTCTGGGCATGAAGTGGACGATGCTTCACAGTTCATATCCTCAGTTTGCTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTTAAAATTCTGGAGATGGTTTAA 2670 0.4213 MEGSSGSGWQKSDSSRALNTSGVSDRNLRLLCPEKNTISGEASHDSGFRKERDRIVLSQGDQPKHLGGLSGVCEGDVAVDPFVHSIEYGDISLRQWLDKPERSVDAYEYWHIFRQIVEIVNLAHSEGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSLDGLNSQAAEIKTQPSFCPRGMHQKRSLGCDDMVPVRTSTTALSESSCMLSSAVYAARASLIEDTEENKTKDRRKGEDVEGKKQAFPMKQILVMETSWYTSPEEVAGAPSSCASDIYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRERIEEQELLLEFLLLVQQKKLEVAEKLQHTLSFLCSDIEEVTKQQERFKEVAGSELGSSNRSALCFPSMTGIVSEDSACLGTRKRVRPRLHVDNTEECDDNIGDDQKNYGIFLSKGSRLMKNFKKLESAYFLTRCRPAYLSGKPVVRHSPLAVDGRGSIVASERSCINNMTSREHCRDTRSAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDTIINEDRDIHYPVVEMASRSKLSSLCWNTYIKSQIASSNFEGAVQLWDVTRSQVLSDMKEHERRVWSVDFSSVDPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSGRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTMNLVSSSTDNSLKLWDLSMCTSRVIDTPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFHNTDPLSGHEVDDASQFISSVCWRGQSSTLLAANSTGNVKILEMV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0430 889 Pfam WD domain, G-beta repeat 749 784 IPR001680 GO:0005515
Dere08g0430 889 Pfam WD domain, G-beta repeat 577 606 IPR001680 GO:0005515
Dere08g0430 889 Pfam WD domain, G-beta repeat 666 700 IPR001680 GO:0005515
Dere08g0430 889 SUPERFAMILY WD40 repeat-like 577 886 IPR036322 GO:0005515
Dere08g0430 889 Gene3D Transferase(Phosphotransferase) domain 1 90 358 - -
Dere08g0430 889 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 550 889 - -
Dere08g0430 889 PANTHER PROTEIN SPA1-RELATED 2 55 889 IPR044630 GO:0009640
Dere08g0430 889 SMART WD40_4 660 700 IPR001680 GO:0005515
Dere08g0430 889 SMART WD40_4 793 832 IPR001680 GO:0005515
Dere08g0430 889 SMART WD40_4 618 657 IPR001680 GO:0005515
Dere08g0430 889 SMART WD40_4 572 607 IPR001680 GO:0005515
Dere08g0430 889 SMART WD40_4 843 887 IPR001680 GO:0005515
Dere08g0430 889 SMART WD40_4 746 784 IPR001680 GO:0005515
Dere08g0430 889 SMART WD40_4 703 742 IPR001680 GO:0005515
Dere08g0430 889 ProSitePatterns Trp-Asp (WD) repeats signature. 771 785 IPR019775 -
Dere08g0430 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 753 786 - -
Dere08g0430 889 MobiDBLite consensus disorder prediction 1 21 - -
Dere08g0430 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 704 - -
Dere08g0430 889 SMART serkin_6 25 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0430 889 PRINTS G protein beta WD-40 repeat signature 644 658 IPR020472 -
Dere08g0430 889 PRINTS G protein beta WD-40 repeat signature 771 785 IPR020472 -
Dere08g0430 889 PRINTS G protein beta WD-40 repeat signature 687 701 IPR020472 -
Dere08g0430 889 SUPERFAMILY Protein kinase-like (PK-like) 80 357 IPR011009 -
Dere08g0430 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 709 IPR001680 GO:0005515
Dere08g0430 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 786 IPR001680 GO:0005515
Dere08g0430 889 Coils Coil 344 364 - -
Dere08g0430 889 ProSiteProfiles Protein kinase domain profile. 1 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0430 889 Gene3D - 553 889 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0430 Dere-ChrDere08 6784405 6791434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0430 657 831 Miscellaneous Gene Families AT5G08390 24.022 8.09e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Dere08g0430 WD40 0.029 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0430 08 6784405 6791434 Dere08g0430 08 6784405 6791434 ECH