Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0417 ATGGTGCTGCTCAGAAGTTTCCCCTCGACTTTTTGCCGATGGGGTTTCTTGGCTTGCCTTCTCTGCTTATCTCTGGGTCATAAAACCTCAGTCCCGTCTTATGACCCACATGATTTATTGGCCCTGAAGCAATTTGCAGGCAACCTTACTAAGGGGTCTATACTCACAGCCTGGTCCGATGATGTTGTCTGCTGCAAATGGATTGGAGTTGTCTGTGATAATGTGACTAATGGGACAGCCACAATTAGAGTGACGAGGTTGCTTCTACCAAAAATGGGTCTCAAAGGGAGGATTTCGCCCTCTCTAGCACTACTAGATCAGCTTACTTTGCTGGATCTTTCATATAATTATCTCCAAGGTCAACTGCCTGCAGAATTCTCTAACTTGAAGCAGTTGAAAGTTCTTGACTTGAGCCATAATATGCTGTCAGGACCAGTTTCTGAGGCTCTTTCTGGCTTGCAATCCATTCAGATACTGAACATTTCTAGCAATTCGTTTGCTGGAAAGCTCTTGCAGCTTGGGCAATTTCCGCATATCATTGCATTCAACATCAGCAACAATTCATTCAGTGGTAAGTTCAGTTCTCAAATTTGCAGTTCCTCAAAGGGGCTTCGTGTTCTTGATTTATCTGCAAATCATTTTGCTGGTGGTCTTGAAGGCTTGGGCAATTGCAGCTCGTCTCTCCAACAGTTGCATTTGGATCGCAATTCATTTTCTGGCCCTCTTCCAGATTCTTTATACTCAATGTTGGCCTTGGAGCAACTCTCAATTTCTGTGAACAATTTCTCTGGCCAGTTAAGCAGGCAATTAAGTAAGCTCTCTAGCCTGAAGTCTCTTGTAATTTCTGGAAACCATTTTTCAGGAAAACTCCCTGATGTGTTTGGGAACTTTGCTCATCTAGAGCAAATAATAGCACGTTCCAATATGTTCGCTGGACCATTGCCTTCCACCCTGGCTTTATGCTCAAAGCTTCAAGTGCTTGATCTTCGAAACAATTCTTTGAGAGGCCCTATTGATCTTAATTTTACTGGGCTGGCTAATCTTTGCACTCTTGATCTTGCTACTAATCATTTCAATGGATCCCTTCCGAATACGTTGTCCTATTGTCATAATTTGAAAGTTCTGAGTGTTGCTAAGAACGAGTTAACCGGCCCCATCCCTGAAAGCTATGGAAATCTCACTTCACTTGAGTTTCTTTCATTGTCAAACAACAGCTTACTGAACTTATCCGGGGCGCTCTCTGTACTTCAGCAGTGCAAAAATCTTACCACTCTTATCCTCACAAAGAATTTTCATGATGAGAGAATTCCAGAAAGTGTTTCAGGATTTGAGAACCTTATGATTTTAGCACTCGGAAATTGTGGTCTTAAAGGTCAAATCCCTGTTTGGTTATTGAAATGCAGGAAATTGCAAGTCCTGGATTTGTCCTGGAACCATTTGGAAGGTAGCATTCCTTCTTGGATAGGTTGGATGGACAATTTGTTCTATTTGGATTTCTCAAATAATTCTCTCACAGGGGATATACCGAAAAGTTTGACATCGCTGGGGGCCCTCATATCCTCAAATTTTAGTATATCAAAATCAAACTGTGCATCAAATGCAGGTATTCCTCTCTATATTAAGAGAAACCAGAGTGCTAGTGGGTTGCCGTATAACCAAGCCTCTAGTTTCCCTCCTTCAATTTACTTGAGCAATAACAGATTAAGTGGAATGATATGGCCTAAAATTGGGCGATTGAAGGCACTGCATGTGTTAGATTTAAGCAGGAACAACATCAGTGGTATCATTCCCAGCTCTATTTCTGAAATGGAGAACTTGGAAACATTAGATTTATCAAATAACAATCTCTATGGAACAATCCCTCCATCATTTAACAAACTCACATTCTTATCAAAGTTCAGTGTGGCATTTAATCACTTGGAGGGACCAATTCCAACAGGGGGACAGTTTCTCAGCTTTGCTAGTTCAAGCTTTGAAGGCAACCTGGGGCTTTGCAGGGATATAGATACCCCTTGCAAATCTGTTGATGATATGGGGTTCAAGCCCAACATTGCTTCTGGTTCTGCCAGCAAATTTGGCCGAAGCAACATCCTTGGCATAACAGTCAGTGTAGGTATAGGGCTTGCAGTGCTTCTTGCAATTGCTCTGCTAAAAATGTCGAAGAGGGAAGAGGATAAGCTGATCATGTACGATGCTGAAGAACTTAGCTGGCCACAAGGCTCAGCTGAAGCCCTTGTTTCCTCAAAATTGGTACATTTTCAAAACTCAGACTGCAAAGATCTCACAGTTGAAGATTTGTTAAAATCCACAGACAATTTCAACCCAAAAAACGTAATTGGTTGTGGTGGGTTTGGTCTTGTGTACAAGGCAATTCTTCCAAATGGAACAAAAGCAGCTATCAAGAAACTTTCTGGGGAATGTGGTCAGATGGAGCGGGAATTCCAAGCTGAAGTTGAGGCCCTTTCAAGAGCTCAGCACCCAAACCTTGTTTCTCTCAAAGGATATTGCCGGCACGGCAATGAGAGATTGTTGATTTACTCCTTCTTGGAAAATGGAAGCTTGGATGATTTGCTGCATGAGAATGAGGAAGGAAAGTCAGCTCTGACATGGGATGTAAGACTCAAGATCGCACAAGGCGCAGCTCGTGGATTAGCTTACTTGCACAAGGGGTGTGAACCATGTGTAGTTCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTCATTTGGCTGATTTTGGTCTCTCGAGGCTACTTCAACCCTATGATACTCATGTCACAACAGATTTAGTAGGAACCTTAGGATATATTCCTCCAGAGTACAGTCAGTCATTAACAGCAACCTTCAGGGGTGATGTTTTTAGTTTTGGCGTTGTTCTTATTGAGCTTCTTACAGGAAGAAGGCCTATAGAAGTCATCAAGGGGAAAGGCTGCAGGAATCTGGTGTCTTGGGTGTTTCAGATGAAGTCTGAGAATAAGGAGCAGGAAATTTTTGATCCGGCCATTTGGCACAAGGATAATGAGAAACAGCTCTTGGAGGTTCTCTCAATTGCTGGTAAATGTGTAGACCAAGTTCCCAGGCAGAGACCCAGTATTGAAGAGGTTGTTTCATTGCTTGATGCTGTTGGATGTGATGAATCTGAACATTGA 3165 0.4227 MVLLRSFPSTFCRWGFLACLLCLSLGHKTSVPSYDPHDLLALKQFAGNLTKGSILTAWSDDVVCCKWIGVVCDNVTNGTATIRVTRLLLPKMGLKGRISPSLALLDQLTLLDLSYNYLQGQLPAEFSNLKQLKVLDLSHNMLSGPVSEALSGLQSIQILNISSNSFAGKLLQLGQFPHIIAFNISNNSFSGKFSSQICSSSKGLRVLDLSANHFAGGLEGLGNCSSSLQQLHLDRNSFSGPLPDSLYSMLALEQLSISVNNFSGQLSRQLSKLSSLKSLVISGNHFSGKLPDVFGNFAHLEQIIARSNMFAGPLPSTLALCSKLQVLDLRNNSLRGPIDLNFTGLANLCTLDLATNHFNGSLPNTLSYCHNLKVLSVAKNELTGPIPESYGNLTSLEFLSLSNNSLLNLSGALSVLQQCKNLTTLILTKNFHDERIPESVSGFENLMILALGNCGLKGQIPVWLLKCRKLQVLDLSWNHLEGSIPSWIGWMDNLFYLDFSNNSLTGDIPKSLTSLGALISSNFSISKSNCASNAGIPLYIKRNQSASGLPYNQASSFPPSIYLSNNRLSGMIWPKIGRLKALHVLDLSRNNISGIIPSSISEMENLETLDLSNNNLYGTIPPSFNKLTFLSKFSVAFNHLEGPIPTGGQFLSFASSSFEGNLGLCRDIDTPCKSVDDMGFKPNIASGSASKFGRSNILGITVSVGIGLAVLLAIALLKMSKREEDKLIMYDAEELSWPQGSAEALVSSKLVHFQNSDCKDLTVEDLLKSTDNFNPKNVIGCGGFGLVYKAILPNGTKAAIKKLSGECGQMEREFQAEVEALSRAQHPNLVSLKGYCRHGNERLLIYSFLENGSLDDLLHENEEGKSALTWDVRLKIAQGAARGLAYLHKGCEPCVVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQSLTATFRGDVFSFGVVLIELLTGRRPIEVIKGKGCRNLVSWVFQMKSENKEQEIFDPAIWHKDNEKQLLEVLSIAGKCVDQVPRQRPSIEEVVSLLDAVGCDESEH 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0417 1054 SMART LRR_sd22_2 579 608 - -
Dere08g0417 1054 SMART LRR_sd22_2 321 342 - -
Dere08g0417 1054 SMART LRR_sd22_2 129 155 - -
Dere08g0417 1054 SMART LRR_sd22_2 393 411 - -
Dere08g0417 1054 PRINTS Leucine-rich repeat signature 603 616 - -
Dere08g0417 1054 PRINTS Leucine-rich repeat signature 132 145 - -
Dere08g0417 1054 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 740 848 - -
Dere08g0417 1054 ProSiteProfiles Leucine-rich repeat profile. 395 417 IPR001611 GO:0005515
Dere08g0417 1054 Gene3D Phosphorylase Kinase; domain 1 739 848 - -
Dere08g0417 1054 Pfam Leucine rich repeat 560 616 IPR001611 GO:0005515
Dere08g0417 1054 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Dere08g0417 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Dere08g0417 1054 FunFam Leucine-rich repeat receptor-like protein kinase 849 1054 - -
Dere08g0417 1054 SUPERFAMILY RNI-like 221 522 - -
Dere08g0417 1054 Gene3D Ribonuclease Inhibitor 35 262 IPR032675 -
Dere08g0417 1054 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 677 - -
Dere08g0417 1054 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Dere08g0417 1054 SUPERFAMILY L domain-like 59 304 - -
Dere08g0417 1054 Gene3D Ribonuclease Inhibitor 263 365 IPR032675 -
Dere08g0417 1054 Gene3D Ribonuclease Inhibitor 369 676 IPR032675 -
Dere08g0417 1054 Gene3D Transferase(Phosphotransferase) domain 1 849 1051 - -
Dere08g0417 1054 SMART LRR_typ_2 345 369 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 603 626 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 273 296 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 579 602 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 467 491 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 105 128 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 129 152 IPR003591 -
Dere08g0417 1054 SMART LRR_typ_2 393 416 IPR003591 -
Dere08g0417 1054 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 303 - -
Dere08g0417 1054 PANTHER LEUCINE RICH REPEAT KINASE 2 295 1045 - -
Dere08g0417 1054 CDD STKc_IRAK 779 1045 - -
Dere08g0417 1054 Pfam Leucine Rich Repeat 469 488 IPR001611 GO:0005515
Dere08g0417 1054 SMART serkin_6 773 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0417 1054 Pfam Protein kinase domain 775 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0417 1054 ProSiteProfiles Leucine-rich repeat profile. 605 627 IPR001611 GO:0005515
Dere08g0417 1054 SUPERFAMILY Protein kinase-like (PK-like) 754 1044 IPR011009 -
Dere08g0417 1054 ProSitePatterns Protein kinases ATP-binding region signature. 779 802 IPR017441 GO:0005524
Dere08g0417 1054 SUPERFAMILY L domain-like 549 668 - -
Dere08g0417 1054 ProSiteProfiles Protein kinase domain profile. 773 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0417 Dere-ChrDere08 6634146 6637310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0417 94 1053 Receptor kinase-like Gene Family AT1G55610 35.149 4.97e-167 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Dere08g0417 Pkinase 5.9e-45 CL0016