Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0414 ATGGAGGCCAAGAGCATTGAGAGGAAGCGAACATTAACTGAGAAGTCAAGAAAGGATAAAATGATTGAAGAAGAAGTAGATGATGAAGAAGAAGAAGAGGACGAAAGAAGTGGTGGTGGCACTCATGCAGAAGAGGACAAGAAGAAAGGGGCTGGTGGGAGTGGGAGAAGAGGATCAAGTGGGGGCCTTGTGGCTTCTTCACCTCCCTGCCAGGCAGAGAGGTGTGGAGCTAATCTGGCCAACGCAAAGCGATATCATCGCCGCCATAAGGTGTGTGAATTTCATTCCAAGGCGCCTGTTGTGATGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCACGACATAGGGGAATTTGATGAAGCTAAGAGAAGCTGCCGGAGGCGCTTGTCTGAACACAACGAGAGACGCCGGAAAAGTGTTGCTGAAACTTACAATGAAGGCAGCAAAAGCCATCATAACCCAATGGAAGGACGGTGGAGGCATGTTGATGACAGGGGAAGAAGAGTTAGTCACGTGAACAATAATTCTGGGAGTTCTGGCAACAAATCTTTCCATATCAGATAA 579 0.4853 MEAKSIERKRTLTEKSRKDKMIEEEVDDEEEEEDERSGGGTHAEEDKKKGAGGSGRRGSSGGLVASSPPCQAERCGANLANAKRYHRRHKVCEFHSKAPVVMVAGLRQRFCQQCSRFHDIGEFDEAKRSCRRRLSEHNERRRKSVAETYNEGSKSHHNPMEGRWRHVDDRGRRVSHVNNNSGSSGNKSFHIR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0414 192 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Dere08g0414 192 Pfam SBP domain 70 143 IPR004333 GO:0003677
Dere08g0414 192 Gene3D - 62 131 IPR036893 GO:0003677|GO:0005634
Dere08g0414 192 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 145 IPR044817 GO:0003677
Dere08g0414 192 MobiDBLite consensus disorder prediction 1 71 - -
Dere08g0414 192 MobiDBLite consensus disorder prediction 135 192 - -
Dere08g0414 192 Coils Coil 12 32 - -
Dere08g0414 192 MobiDBLite consensus disorder prediction 176 192 - -
Dere08g0414 192 MobiDBLite consensus disorder prediction 36 53 - -
Dere08g0414 192 MobiDBLite consensus disorder prediction 135 175 - -
Dere08g0414 192 FunFam Squamosa promoter-binding-like protein 14 62 131 - -
Dere08g0414 192 MobiDBLite consensus disorder prediction 1 23 - -
Dere08g0414 192 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0414 Dere-ChrDere08 6626748 6627937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0414 46 153 SBP-box Gene Family AT1G53160 63.303 2.50e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere08g0414 SBP 9.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0414 08 6626748 6627937 Dere02g2689 02 30312957 30314340 ECH
Dere08g0414 08 6626748 6627937 Dere08g0414 08 6626748 6627937 ECH