Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0410 ATGGCTGATGTAGCAGGTTTAGCTGAGGCAGCAGGATCGAGATTCAGTTCACTCGAGCTAATTGGACAGGGATCATTTGGGGACGTATATAAAGGTTTTGACAAGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCAGAGGATGAGATTGAAGACATCCAGACGGAAATTTCTGTTCTGCAACAATGCCGATCTCCATACATTACTGAGTATTATGGTTCCTATCTCAATCAAACAAAACTTTGGATAATAATGGAATACATGGCTGGCGGCTCTGTTGCTGACCTACTCCAATCAGGTCCTCCACTTGATGAAATGTCAATTGGTTGCATCCTACGTGACTTGCTGCATGCAATTGATTACTTACACAGTGAAGGAAAAATCCATAGAGACATTAAAGCTGCAAACATTTTATTGACAGAGAATGGTGATGTGAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCGTTCTGGATGGCACCAGAGGTTATTCAAAATTCAGAAGGATACAATGAGAAGGCAGATATCTGGTCTTTGGGGATCACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCACCCTATGAGAGTGCTTTTTATCATACCCCGGGAGAATCCGCCACAGCTAGATGAACATTTTTCTCGTCCCATGAAGGAGTTTGTTGCTTTGTGTCTAAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAGACACCGTTTTATTCGGAATGCAAGGAAAAGCCCAAAGCTTTTGGAGAGAATAAGGGAGCGTCCAAAGTACCAAGTAAAGGAAGATCAAGGAACATCTAGAAATGGCTCAAGAGGGATAGGGGAGGGATCTGATACTATCAGGGTGGCAAGAGATATAAGAGGCGAAGAAACTCAGAGAGCCAGTGGTCAGGGTAGAAGTGTGAAAAATGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTTTCACGTCCACCTCATAGTCCGGCAATTACTGTTAACCAAAAAAAAATTTCAGAGAGAAGTAGACTTACTGAATCTTCAGAAACTATCTCTGGAAAAGATGTTAGGGTACCTTATCATGATGAGCACAAGGGCAATCACCTTGATGATGATGAATTGTCTGGGAATGGATCAGGAACAGTTGTCATTCGATCTCCAAAGGGGTCGCATCCATCATTGACTAGTGACTATAGCCCCCAGTCAAGCAGCAGCTTTGCTTCTTTTGAAGATGCTTCTACCAGTGGAACAATTGTTTTCCGTGGTCAGCATGATGATTCTGATTCAGAGGCAGCAAGATTTAGACTGCAACTTCAGGAGAGAACTTCAAATGCCTCACAGGAGGATAGCTCTGCAAATCTTGCTGAGGCAAAGGCTGCTATGCAAGGAGGACGAAAAGGGAATACTCGAGAGAGATCTGCACTGGGAAAGATCAACGATTTGCAGGAAAGCAGGAGAGACCAAATGACAAGCAGCTCTGATTCTTCCAGATTATCTCGTGATCACGTGGATGGACAAAAGGGAATTTCAAGATCTCACCATACTAGTGATGATGAAGAAAATGCCAAAATAATGTCATCCTCTGTACCATTGTCAAATTTGCTTATTCCTTCGGTAAAAGAGGCCATTGCTGATGATCCAGATGGGTCAATTGTACAAGCAGTTATCAATTCACTTGTAAACATGGAGCGCACAAAGCCTAAATCCTGTGATCTTCTTGTCAGAAAGTTGCTTCAGCGGTTGGAAAGTTCAAATGAATCTTCATTGAAGGACCTGCAGGAGCTGGCAGGTCACATATTCAACAAGTCAGCTTCAGAAGAAACCCGAAATGCGAGTGCAGCAGCTGATGACCGGAGGAAACAGCAGAGCAAGGAAATCCATTCACATAGCAATCAAAGCCCACTCGCAAGATTTCTTCTCTCAAGATGGCAAGGTCAAGTCTCGCGGGATCTAAATCCAGCTTAA 2052 0.4352 MADVAGLAEAAGSRFSSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQTEISVLQQCRSPYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIGCILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVALCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKYQVKEDQGTSRNGSRGIGEGSDTIRVARDIRGEETQRASGQGRSVKNAGWDFSIGGSQGTGTFRSVSRPPHSPAITVNQKKISERSRLTESSETISGKDVRVPYHDEHKGNHLDDDELSGNGSGTVVIRSPKGSHPSLTSDYSPQSSSSFASFEDASTSGTIVFRGQHDDSDSEAARFRLQLQERTSNASQEDSSANLAEAKAAMQGGRKGNTRERSALGKINDLQESRRDQMTSSSDSSRLSRDHVDGQKGISRSHHTSDDEENAKIMSSSVPLSNLLIPSVKEAIADDPDGSIVQAVINSLVNMERTKPKSCDLLVRKLLQRLESSNESSLKDLQELAGHIFNKSASEETRNASAAADDRRKQQSKEIHSHSNQSPLARFLLSRWQGQVSRDLNPA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0410 683 Coils Coil 48 68 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 640 655 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 526 550 - -
Dere08g0410 683 SUPERFAMILY Protein kinase-like (PK-like) 12 304 IPR011009 -
Dere08g0410 683 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0410 683 MobiDBLite consensus disorder prediction 336 367 - -
Dere08g0410 683 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Dere08g0410 683 MobiDBLite consensus disorder prediction 368 401 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 307 321 - -
Dere08g0410 683 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 631 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 499 513 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 278 438 - -
Dere08g0410 683 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0410 683 MobiDBLite consensus disorder prediction 632 662 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 408 438 - -
Dere08g0410 683 CDD STKc_MST3_like 13 287 - -
Dere08g0410 683 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0410 683 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 468 482 - -
Dere08g0410 683 MobiDBLite consensus disorder prediction 468 552 - -
Dere08g0410 683 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0410 Dere-ChrDere08 6582893 6590625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0410 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 63.481 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Dere08g0410 Pkinase 6.8e-69 CL0016