Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0406 ATGGCTCCTAGAGACAGACCCATCTCTCTTGCCGGACCCCACGACCCGACCCACGCAGCCAAGGAGATTCGTTATAGAGGCGTCAGGAAGCGACCCTGGGGGCGTTACGCCGCCGAGATCCGTGACCCGGGTAAGAAGACCCGGGTTTGGCTGGGAACTTTCGACACCGCCGAGGAGGCGGCGCGTGCGTACGACACGGCGGCTAGGGAGTTCCGAGGAGCCAAGGCGAAGACTAATTTTCCCACTCCTTCTGAGCTTATAAATAACAACCCCGCCCGCAGTCCAAGCCAAAGCAGCACCCTTGATTCTTCATCTCCGCCGCCGCCACCTCCACCGCTAGATCTCACCTTGACACCGCTCTCCGCCGGCGTCGGAGCTATGGGGTATCCAGTAATCCCCGTGGCTCGCCCGGTTATATTTTTTGACGCGTTTGCGAGGGCAGAGACCATGAGAAGTGTTGGCCGCCGCGAGATGTGCGGGTTTGACCGCCCAGTGATTAATTTCCGCCGCGCTAGCGCCGGCACACAGAGTGACTCCGACTCGTCGTCTGTCGTGGACTACGAGCATGCTCCGCCGCCTCGGAAGCTTCTAGATCTTGACCTTAACCTTGCTCCTCCCCCTGAGGTTGCTTGA 633 0.6019 MAPRDRPISLAGPHDPTHAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELINNNPARSPSQSSTLDSSSPPPPPPPLDLTLTPLSAGVGAMGYPVIPVARPVIFFDAFARAETMRSVGRREMCGFDRPVINFRRASAGTQSDSDSSSVVDYEHAPPPRKLLDLDLNLAPPPEVA 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0406 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 186 - -
Dere08g0406 210 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Dere08g0406 210 MobiDBLite consensus disorder prediction 1 20 - -
Dere08g0406 210 MobiDBLite consensus disorder prediction 75 117 - -
Dere08g0406 210 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Dere08g0406 210 MobiDBLite consensus disorder prediction 172 210 - -
Dere08g0406 210 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Dere08g0406 210 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Dere08g0406 210 MobiDBLite consensus disorder prediction 102 116 - -
Dere08g0406 210 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Dere08g0406 210 MobiDBLite consensus disorder prediction 81 101 - -
Dere08g0406 210 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Dere08g0406 210 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Dere08g0406 210 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Dere08g0406 210 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0406 Dere-ChrDere08 6550957 6551589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0406 15 188 AP2-EREBP Transcription Factor Family AT3G15210 57.732 1.69e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere08g0406 AP2 8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0406 08 6550957 6551589 Dere02g2701 02 30408135 30408830 ECH
Dere08g0406 08 6550957 6551589 Dere08g0406 08 6550957 6551589 ECH