Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0403 ATGGATAACTACTATCATATGGATAACAGAGATGCTCATTTGCCCCCTGGGTTTCGATTCCACCCCACCGACGAGGAGCTCATCACTTTCTACCTCCTCAAGAAGGTTCTGGACAACAGCTTCACAGGAAGAGCCATTGCTGAAGTTGATCTTAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCAGCCTACGAGACCGAAAGTATCCAACTGGGCTGCGCACTAATAGAGCCACCGAAGCTGGATACTGGAAGGCCACGGGAAAAGACAGGGAGATTTACAGTTCAAAAACTTGCTGTCTCGTGGGCATGAAGAAGACTCTGGTTTTTTACCGAGGCCGAGCTCCCAAAGGCGAAAAGAGCAACTGGGTCATGCATGAGTATCGCTTAGAAGGCAAATTTGCTTACCATTACCTCTCACGCAGCTCTAAGGATGAGTGGGTCATATCTCGTGTTTTCCAGAAGAGTATCTCCTCCTCTGGGAATGGGGGCTCCACTGTGTCTTCTGCCAGTGGCTCCAAGAAGACCAACGCCAGAATAAGCACTTCTGTAAGCATGAGCCTCTACCCAGAACCCGGTTCTCCCTCCTCTATCTACCTGCCTCCTCTGCTTGATTCCTCTCCTTACCCCACCACCAGCGCCGCCGCCAACGACCGTGACAGCTGCTCCTATGACGGCAGTAGCACCACTCCGAGGGAGCACGTGTCCTGTTTCTCCACATTCTCTGCATCTGCCGCCGCCAACAACCTCTCAAATGTTGTAAGCTTTGACCTTACTCCGCCGCCGTCGTCTGTGGCGCTGGACCCATTTGCTCGATTCCAGAGTAACGTTGGTGTTCCTGCTTTCCCTAGCCTTAGGTCACTGCAGGACAATCTTCAGCTGCCATTCTTCTCTCCGGCTACCGTCCATGGAGGCTCCGGTAGTGACATGAACGGATGGACTACGCCGGAGGAGCAGAGGGCAGCGGACGTTGGTTCTGGCATGCCATTGTGTCCATCCGAGCTTGATTACATGTGGGGCTACTAG 1059 0.5297 MDNYYHMDNRDAHLPPGFRFHPTDEELITFYLLKKVLDNSFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSISSSGNGGSTVSSASGSKKTNARISTSVSMSLYPEPGSPSSIYLPPLLDSSPYPTTSAAANDRDSCSYDGSSTTPREHVSCFSTFSASAAANNLSNVVSFDLTPPPSSVALDPFARFQSNVGVPAFPSLRSLQDNLQLPFFSPATVHGGSGSDMNGWTTPEEQRAADVGSGMPLCPSELDYMWGY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0403 352 FunFam NAC domain-containing protein 100-like 23 170 - -
Dere08g0403 352 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Dere08g0403 352 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Dere08g0403 352 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Dere08g0403 352 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Dere08g0403 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0403 Dere-ChrDere08 6529499 6531210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0403 4 352 NAC Transcription Factor Family AT5G53950 57.292 8.35e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g0403 NAM 2e-40 No_clan