Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0398 ATGGAGAGATTCTTCTTGTCGTTCCAAGACCAGAAACACCCAGAAAAACACAACAAAAGGAGGCTAACTGAAGAACAAGTGGCCATCCTCGAGAAAAGCTTTGCCTGCAACAAGAAGCTGGAGGCAGAGCAGAAGTTGCAGCTCTCGGACCAACTGGGTGTGCCTCCAAGACAGATTGCCATATGGTATCAGAACAAACGAGCTCGCTGGAAGACCCAGAGCCTTGAGGTGGACTATGGTGCCTTGCAGTTGAAGCTGGAGAAGGTGATGGCTGAGAAGCAGCAGCTTGAGAGAGATGTGGAAAGGCTCAAGGCAGAGCTGAAGGAGGCCAAGGACATGCTGCTTTTCATGAAGGGTGGAGGAGGAGGAGGGGGAAGAGACCATAGTTCTTTTGGTGAATTTTCAACATCTTGCGAAGAGGTTATGCAGGTTGAAGAGCTATATGCTTGTTTTGTGGATCCAAATGAGTTTGTTTATAATTGA 483 0.4803 MERFFLSFQDQKHPEKHNKRRLTEEQVAILEKSFACNKKLEAEQKLQLSDQLGVPPRQIAIWYQNKRARWKTQSLEVDYGALQLKLEKVMAEKQQLERDVERLKAELKEAKDMLLFMKGGGGGGGRDHSSFGEFSTSCEEVMQVEELYACFVDPNEFVYN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0398 160 Pfam Homeodomain 17 71 IPR001356 GO:0003677
Dere08g0398 160 ProSitePatterns 'Homeobox' domain signature. 48 71 IPR017970 GO:0000981|GO:0006355
Dere08g0398 160 SUPERFAMILY Homeodomain-like 15 81 IPR009057 -
Dere08g0398 160 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Dere08g0398 160 CDD homeodomain 16 74 IPR001356 GO:0003677
Dere08g0398 160 Coils Coil 79 113 - -
Dere08g0398 160 Gene3D - 11 79 - -
Dere08g0398 160 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 126 IPR045224 GO:0003700
Dere08g0398 160 SMART HOX_1 15 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0398 Dere-ChrDere08 6480318 6480800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0398 16 152 Homeobox Transcription Factor Family AT5G53980 49.296 7.52e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Dere08g0398 Homeodomain 2.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0398 08 6480318 6480800 Dere08g0398 08 6480318 6480800 ECH