Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0394 ATGCGATTATCGTCCACATCCGGTTCGTCATTTGAGCAGCGGAGACTTGATCGATCGGGGTCGCGGCTTCGGAAGAAGCATAAGAGATTGGACGCAATATGCGAAAAGGAGTATAATCGGAACCATGGTGAATTGAATGAGGATGGTAATGGGGCTGGTGCGTTGGGCGCTGATACAGAGCTTCGCCGCAGCTCACGGGTTCGGCGAGCTCCAGTTGTGCTCGATGCCTCTCCTCCTCCCCCAAGGAAACGGCGGAAGTTAGGTAAGAACGTAATGCTGAGGGGTGTAAGGGACGTCAAGAGCCCAGGACGTGTTGATCAGAGTCCCGGTGAGGTAGAGAGTCCCGGAACATGGAGTTCAAGGTTGAGATCCAGGGTTAAAAATGTAGGTTTCACGACGAAGGGGGAGACGGAATCACCAAGTGGGAAAAGGAAGCTGTTTGAGGATATGGATGAATGCAGGGACAACGGAAGAGTGGAGGTTCTAGAGATTAATAAGAAAGAGGAAGTGGAAGGGTTGATGCCTAAAATCGTTAAGTCAAAAAGACCAGGGAGGATCAAAGCAACTAAACATGCAGAAGGGCATAAACATAATGATTCCCATGGGAATTTAGATGAGAGCAAGAGTCAAGAAGTGGAGATTATTTTGAACCAAGACGAGGAGACTGCTTTAAGTTCAGAATCTAAATTGTCCGATGGGAATGCAATGGAAATAGTGGATGGAAATGCCTCTCCAAAGATAGGGACTAGCGAGAGAAACTTATCTGATAATTTGCAGTTGCAGGAGATTAATGGCAATGTTGAATTGCCTCCAATGGAACATGCAGACGTAGATAAACCAGCTGATCACTCAGAGAGTGTGAAGGCAGGGGAAAATGGAAGGGATGCTGTGGAAAGTGTTGGAAATCTGACAAAACAAGTAGAAAATGAAAATTCTGTTGAGAAGGAATCTCCAATTGATGAAAAGACCTTGCAAGATGAAAATATTGTGAAAGTGGACAAGCCCCAACAAGCTTCAAATGACATGACTGACCAACCACGGATTAAGGAGGGCAGACGTTGTGGTTTGTGTGGTGGAGGGACTGATGGCAAACCTCCAAAAAGGTTAGTTCAGGATAATGGTGAGAGTGAGAATGAGGCATATAGCGGGTCTTCAGCTTCGGAGGAGCCTAATTATGATACTTGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGGCGTCTCTTAGGCCCTATTAACGATCGTTATGGTATTGCTGGAATATGGGTTCATCAGCACTGCGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGGGCTGCACTTTGCAGAGGAAGAGCATTGAAGTGCACACGTTGTGGGAGGCGAGGGGCTACCATTGGTTGTCGTGTTGATCGATGTCCAAAGACGTATCACTTGCCTTGTGCACGAGCAAATGGTTGCATCTTTGATCATCGCAAATTTCTTATAGCCTGTACAGATCATCGACACCTCTTCCAACCTCAGGGTAATCAATATTTTGCCCGGATAAAGAAGTTGAAGGCTAGAAAAATGAAGTTGGAAATGAGAAAGCTTTCAAATGATGCTTGGAGAATGGATATTGAAGCAGAAGAGAGATGGTTGGAGAATTGTGGTGAGGATGAAGAGTTTTTGAAACGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCTGTGTACATTGGTGGTCCTGACTCTGACGCTGAAAAGTCGTTTCAGGGTTGGGAATCTGTTGCTGGGCTTAAAGATGTTATCCGGTGCATGAAAGAAGTTGTTATTTTACCTCTGCTCTATCCTGAGTTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTGCATGGATATCCTGGAACAGGTAAAACTCTGGTAGTTCGAGCATTGATAGGTGCATGCGCTCGTGGTGATAAACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATATGTGGGTGATGCTGAGCGCCAGCTAAGACTACTATTCCAGGTTGCTGAAAAATGTCAACCTTCTATAATATTTTTTGATGAGATAGATGGACTGGCACCTAGCCGTACTAGGCAACAAGATCAGACACATAATTCTGTTGTGTCAACACTGCTTGCTCTTTTGGATGGTTTGAAATCTAGGGGTTCAGTTGTAGTCATTGGCGCAACAAATCGTCCTGATGCTGTTGACCCAGCACTTAGGCGCCCAGGAAGATTTGATCGGGAAATTTATTTTCCATTGCCATCATTTGAGGACAGAGCTTCCATTCTCTCGCTTCACACCCAGAGGTGGCCAAAACCAATTGCTGGATCCTTACTCCAGTGGATTGCAAGAAATACTCCTGGCTTTGCTGGTGCAGATCTCCAGGCTCTCTGTACTCAAGCTGCCATCAATGCTTTGAAGAGGAACTTTCCTTTACAAGAAGTGCTGTCTGCTGCTGCAGAGAAAGATTCTGATTGTAAGCGCCTTCCTCTTCCTTCCTTTGCAGTGGAGGAGAGGGACTGGTTGGAGGCTTTATCCTGTTCACCCCCACCATGCTCCCGGAGAGAAGCTGGGAATGCTGCAAATGACATAATATGTGCCCCTCTTCCCATCCACCTTATTCCATTTTTGTTGCAGCCATTATGCACTCTCCTTATATCTCTTTATCTTGATGAACGCCTATGGCTGCCATCTCCTATATCTAAAGCTGTAGCAAGGGTTAAAAATGTGATGATTTCTGCTCTCAACAAAAGGAAAATGTCTATTGATCACTGGTGGTTGCATGTTGATGACTTTCTTCAAGACACAGACATTGCTGCGGATATACATAGGAAGCTCACTTGTTCTGGCATTTTATCTGCAAATGATGGCTTTACTGGTTCTCATGAACCTGTGGATGATAATGATGATAACGGGGTGAAACTTGACCCTTCTATAAAGTACCATGTTAACACATGTAGTGGTTTGTTATCAAATATGTCATTTGCATTGTCCAACAAATCAGGATTTCGGATATTGATATCTGGAAATCCCAAATCTGGTCAGAGACATCTTGCTTCTTGCCTTCTTTACTGTTTTGTTGGTAGTGTTGAAATTCAGAAGATTGATATGGCAACTATTTCACAAGAAGGGCATGGAGATGTGGTGCAAGGGATTGCACAAATATTAATGAAATGTGCTAGCGTGCAATCATGTGTAGTATTCATGCCAAGAATTGATCTGTGGGCAGTGGGGAATCAATTTCAAGTTGCTGAAAATTCTGATTACTGCTCCCCAAATCATCAAATTTCTGAGATGGAAGAGCCTTGTTTCACACACAGACAAGTTGAAAAGAAAAATGAGTTCAATTCAAAGAAAAAGAAATCAACAGAGATGACCAAGGGCCAAGCCAGCTTAAGGTCTTCACATGCCTGGATGTCATTTACCGAGCAGGTGGAGTCCATAGGTGTATACACATCCTTGATGATTCTGGCAACTTCAGATATTCCATATCTAGAACTTCCATGTAAAGTAAGGGAGTTCTTTAAGAGTCACCAATCAAGCTGCAGCCAGTCTACTTTAGTGCAGACAGTGCCTCGTTTTCCCATGCAGATTGAAGGGAATTTTGATCATGCTGTGATGATCAATCTATCTACAGTGGAGCTATTGAGAAATGTAATTGAGCAGCTGGTTCAATTGATCCACAAACGATCTCATATCCATATTGGTACCTGCAAAGGGTACAGAACCTATGATTCAGTTGAAGGTTGTAAAGATAGGGCATGTCTGGGAAAAGATAATGGATCACCCAGTGAAGGTAAGGCTAAAATCCAACTTCCTGAACCCTCTACTAAATTTCCACCACCACCTAATAGTAGGTCACTGAAGGGAAAGTCAACCTTGTTGTTGGCAATATCAACTTTTGGTTATCAAATTCTTCGGTTCCCTCATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGAAGGTCCTTCTGCTGATGTCAGCGGACCTTGGAAGGGCTGGCCTTTTAATTCCTGTATTATTCGTCCTAGTAATCCACTGGACAAGGTAGCTATTTCTTGCAGTTCTGGCTATATTAAAAGCAAAGAAAAATTTAATATAGTCAGAGGCTTGATGGCTGTTGGTTTATCAGCATACAGAGGTGCTTATACATCTGTTAGGGAAGTTTCTAGTGAGGTACGCAAGGTTCTTGAGATCTTAGTTAGGGAAATCAATACAAAAGTTCAAGCTGGGAAAGACAGAAATCAATATCTTCGTGTTCTATCTCAAGTGGCTTATTTGGAAGATATGGTCAATAACTGGGCCTATGCATTGTTAAGTCTAGAGCAGGATTCCCCGGAGTTTGTTGCAAAAGTTACATCAACTAGTGTTGGGTCATTAAACAGTCATGAAAATCACCAAGTTGAAGATGAGGATTGCCAGTTGGTTGTCCCCATGGAAGGTCATGAACCAGAGAGGATGGAGAGAAGTCCCGAAGGAATTGCTGCTGACACTCCTGGATCTCTTGCCTTGAATAACAGAAATGATAATGTAGATAATCTTGATCATGATGGTAGAGTTTCGGAAGGATCTCCACAAAACCATTCTTTTTCAGATAAGCATATTAACAACTCTGCAGCTGCAAGCCAACCTGTTGATCCAGTTGCAACTGAGGAGAATGGCACACTCTCTGGACAATCAGAATCAGTAACTGCTCAAAATCATGAAATTGTAAATGGAGAAATTGGATCGGGAGAAGGCTCAAATGGATTTGCACTTACTCACTCTGTTGCCCTTTCTGAAAAGGAAGAGTTCAGATTGTCAAAAGACTCGAATGAATCCCCATTTACTCATTCTGCTGCACTTTCTGATGATGATTGCAATGCCCGTCAGCCAGAGGGCGTTGAGATTGGTAACTCCAGGACAGTCTCTGCTACAGTTCCCAGCTTGTTGGCAGCGGAGACTGGTATTAGATTAAGTGATGGTGACTCTGGTATAGATGCGAATGCTGTAGAAATTAATGTCTCTTCAACTAGAAGCGGTGATCCTGCTGAATCTGGGGTTGTCTGTTTATATCAATGTTGCCCTGGATGTCTCGACAGTCTTTACCATTTGACACACAAAATCCTTGTTCGTGAGTGGGATTTGAATGGAAGCTGTTGGACGGTTGAAGATGTCCATGATGTTGTTGCATCACTATCTGTGAATCTTATCTCAGCGGTTAGAAAATTTTTTACTGCTGAAAATTTTAATGACTCATCTAATAAAACCCCGAGACAAGAAAAGCATGGAATGCCCCTTGACTGTTTAAACTCAAGATTGTGTAACCCCAAAAATCTAGACGGGGCTGTCGTGCCTGCTGAATGCGTGTCTCACTCCACAAGCCAACATGCAACTGGAAGCAAAGATACAGCGAATGAATCAAAGCTTGACTTAAAATTTGTTTTCAGAGATGGTGTACTGGTTCATATGGACCCTGACAAGGATGTCTCTCTTCACTGTAAATTTGAGACCTTATGCCTTTGTTCTTTTACAGAGTTCATAGTAATGACGAAGCACCCTTTTGGTTGA 5589 0.4323 MRLSSTSGSSFEQRRLDRSGSRLRKKHKRLDAICEKEYNRNHGELNEDGNGAGALGADTELRRSSRVRRAPVVLDASPPPPRKRRKLGKNVMLRGVRDVKSPGRVDQSPGEVESPGTWSSRLRSRVKNVGFTTKGETESPSGKRKLFEDMDECRDNGRVEVLEINKKEEVEGLMPKIVKSKRPGRIKATKHAEGHKHNDSHGNLDESKSQEVEIILNQDEETALSSESKLSDGNAMEIVDGNASPKIGTSERNLSDNLQLQEINGNVELPPMEHADVDKPADHSESVKAGENGRDAVESVGNLTKQVENENSVEKESPIDEKTLQDENIVKVDKPQQASNDMTDQPRIKEGRRCGLCGGGTDGKPPKRLVQDNGESENEAYSGSSASEEPNYDTWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHLFQPQGNQYFARIKKLKARKMKLEMRKLSNDAWRMDIEAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGPDSDAEKSFQGWESVAGLKDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGYPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPSRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSFEDRASILSLHTQRWPKPIAGSLLQWIARNTPGFAGADLQALCTQAAINALKRNFPLQEVLSAAAEKDSDCKRLPLPSFAVEERDWLEALSCSPPPCSRREAGNAANDIICAPLPIHLIPFLLQPLCTLLISLYLDERLWLPSPISKAVARVKNVMISALNKRKMSIDHWWLHVDDFLQDTDIAADIHRKLTCSGILSANDGFTGSHEPVDDNDDNGVKLDPSIKYHVNTCSGLLSNMSFALSNKSGFRILISGNPKSGQRHLASCLLYCFVGSVEIQKIDMATISQEGHGDVVQGIAQILMKCASVQSCVVFMPRIDLWAVGNQFQVAENSDYCSPNHQISEMEEPCFTHRQVEKKNEFNSKKKKSTEMTKGQASLRSSHAWMSFTEQVESIGVYTSLMILATSDIPYLELPCKVREFFKSHQSSCSQSTLVQTVPRFPMQIEGNFDHAVMINLSTVELLRNVIEQLVQLIHKRSHIHIGTCKGYRTYDSVEGCKDRACLGKDNGSPSEGKAKIQLPEPSTKFPPPPNSRSLKGKSTLLLAISTFGYQILRFPHFAELCWVTSKLKEGPSADVSGPWKGWPFNSCIIRPSNPLDKVAISCSSGYIKSKEKFNIVRGLMAVGLSAYRGAYTSVREVSSEVRKVLEILVREINTKVQAGKDRNQYLRVLSQVAYLEDMVNNWAYALLSLEQDSPEFVAKVTSTSVGSLNSHENHQVEDEDCQLVVPMEGHEPERMERSPEGIAADTPGSLALNNRNDNVDNLDHDGRVSEGSPQNHSFSDKHINNSAAASQPVDPVATEENGTLSGQSESVTAQNHEIVNGEIGSGEGSNGFALTHSVALSEKEEFRLSKDSNESPFTHSAALSDDDCNARQPEGVEIGNSRTVSATVPSLLAAETGIRLSDGDSGIDANAVEINVSSTRSGDPAESGVVCLYQCCPGCLDSLYHLTHKILVREWDLNGSCWTVEDVHDVVASLSVNLISAVRKFFTAENFNDSSNKTPRQEKHGMPLDCLNSRLCNPKNLDGAVVPAECVSHSTSQHATGSKDTANESKLDLKFVFRDGVLVHMDPDKDVSLHCKFETLCLCSFTEFIVMTKHPFG 1862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0394 1862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 505 IPR013083 -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 309 329 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 375 391 - -
Dere08g0394 1862 SMART AAA_5 625 766 IPR003593 GO:0016887
Dere08g0394 1862 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 765 857 - -
Dere08g0394 1862 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 349 505 - -
Dere08g0394 1862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 857 IPR027417 -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 1269 1297 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 178 208 - -
Dere08g0394 1862 Gene3D - 590 865 IPR027417 -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 28 44 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 221 256 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 1495 1574 - -
Dere08g0394 1862 ProSiteProfiles Extended PHD (ePHD) domain profile. 383 503 IPR034732 -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 1536 1574 - -
Dere08g0394 1862 ProSitePatterns AAA-protein family signature. 734 752 IPR003960 GO:0005524|GO:0016887
Dere08g0394 1862 MobiDBLite consensus disorder prediction 1 90 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 1614 1634 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 192 208 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 356 396 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 305 331 - -
Dere08g0394 1862 Pfam ATPase family associated with various cellular activities (AAA) 629 764 IPR003959 GO:0005524|GO:0016887
Dere08g0394 1862 Gene3D - 765 857 - -
Dere08g0394 1862 Pfam AAA+ lid domain 790 822 IPR041569 -
Dere08g0394 1862 PANTHER AAA DOMAIN-CONTAINING 22 1761 IPR045199 -
Dere08g0394 1862 FunFam ATPase family, AAA domain-containing 2 588 770 - -
Dere08g0394 1862 MobiDBLite consensus disorder prediction 100 119 - -
Dere08g0394 1862 Pfam PHD-like zinc-binding domain 424 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0394 Dere-ChrDere08 6401274 6411550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0394 591 826 Calmodulin-binding Proteins AT3G56690 40.756 4.70e-45 176