Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0386 ATGGATCAGATGACTGATTTGGAAATGGATCAACAAGGGCATGACTATTTTCATTCTGAACCCTGTATTATTCTGAGGGGCCCCAATATCTCACAGACAAATATCTGCACGGTGGTGACTGCTTCAGGGAACACTAGTAATATTGATTCCCATTATTTACTAGATACTTATGACAATGGTCTGATGTATGGGGTGCTACAATTCAATGGGAGTAATCATCAGCCAAACCTTGATATGGGTGTTGCAGCCTCGTCTACTTTCTTTTATTCTGGCATGAATCCTTCCTCTGGTCCTGGTGTATTGCCTCAGCCCATTAATTACCAAGCCTCTGATCAGTTGCCAACTTTAGGCGCATATGCTGTCTCTGGAGTTTCTTCAGATAATTTTGGAAGGTGCAATGGCTTCATTGATGATGCAAGAGGTCCATACAAACAAAAAATTACTGAGGGTATCAGAGGACATCACCAGTATTTTAACGCTGTAGCTAGTTCTTCAGTAGCTCCTCCAAATGTCAGGCACTCTGATGGGGTTGCTATGAGGGATACTGCATCATATTCCTTGCCTCAATTCAGAGGAAATCGCATTCCTTCACTTGTGGAAGTTGGACATCGTGGTAGTGTCTGGAGCAGGTCAGGTGAGCCTGTTATGGTGCACGAACATAACCATATGATTCGAGAAAACTATTTGGGGCAGCACTTTCAACCAGCTCTTCCTCCCTGGCTGGACCAGCAATTGAACAGTACTAGCAGTGATGGACATAATACTTCCTGGAATCAATCTCATTCAATGCCTTATATGCAAGCAACTGTTAATGGAAGTTCATTAGAGAATGCAAGCATGGGTATGCAGAGATATCATGATACAGCAAACAACAGAAGCAACTACAGGCTTCCTCATCCTCCTGTCAACCACCAGCACCATAATTTTCACTTTCCAACCCTGCCTATGCAAGGAGTGAGAGGCCGCAACATCTTCCACCCTCCAGTAACTGCAGCTACTTATAGGGTTCCATCAAATTCTTCACGCAATACTGCTATTCCAGTGCAGAATAGTTTTGAGTTAGGTGCTAGGCATGTTGGTCCTGCACCATCAGCAAGTCTACGGATATATCGTCCTCCTAGAGGAGTTATGCCCGAGACAACTCTCAGACATCGAAATGTCCCACCTATGAGTTTTCTCCATGCTGATGATGTTGCAATACTCGATGAAGTGGAAAATTTGGTTGACCATCATCATAGTGATATGCGCATGGACATAGAGGATATGTCTTATGAGGCAAGTGGACTAAGTTTGATTGAGCTTCTTGCTTTGGGTGAGCGGATTGGCAATGTGAGCACAGGTTTATCGGAGGAAACTATTACAAGTCAATTGAAGTTGAAGACTTACAAGTCTTCTGCTACTATTAATCTGGAGGAAGCTGCTCCCGAGGATGAGGAAGCTGATGCTTGCATCATATGCCAGGATGAATATAAGAACCAAGAGACGATTGGAATTCTCAAGTGTGGGCACGAGTATCATGCTGATTGCTTGAAGCAATGGTTACTGCTGAAGAACGTCTGTCCCATATGCAAATCAGAAGCAATGACCCCTAGAAGGAAGGATGAATAG 1608 0.4378 MDQMTDLEMDQQGHDYFHSEPCIILRGPNISQTNICTVVTASGNTSNIDSHYLLDTYDNGLMYGVLQFNGSNHQPNLDMGVAASSTFFYSGMNPSSGPGVLPQPINYQASDQLPTLGAYAVSGVSSDNFGRCNGFIDDARGPYKQKITEGIRGHHQYFNAVASSSVAPPNVRHSDGVAMRDTASYSLPQFRGNRIPSLVEVGHRGSVWSRSGEPVMVHEHNHMIRENYLGQHFQPALPPWLDQQLNSTSSDGHNTSWNQSHSMPYMQATVNGSSLENASMGMQRYHDTANNRSNYRLPHPPVNHQHHNFHFPTLPMQGVRGRNIFHPPVTAATYRVPSNSSRNTAIPVQNSFELGARHVGPAPSASLRIYRPPRGVMPETTLRHRNVPPMSFLHADDVAILDEVENLVDHHHSDMRMDIEDMSYEASGLSLIELLALGERIGNVSTGLSEETITSQLKLKTYKSSATINLEEAAPEDEEADACIICQDEYKNQETIGILKCGHEYHADCLKQWLLLKNVCPICKSEAMTPRRKDE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0386 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 528 IPR045191 GO:0061630
Dere08g0386 535 SUPERFAMILY RING/U-box 477 529 - -
Dere08g0386 535 Pfam Ring finger domain 482 524 IPR001841 -
Dere08g0386 535 ProSiteProfiles Zinc finger RING-type profile. 483 524 IPR001841 -
Dere08g0386 535 FunFam E3 ubiquitin ligase BIG BROTHER 444 528 - -
Dere08g0386 535 SMART ring_2 483 523 IPR001841 -
Dere08g0386 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 529 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0386 Dere-ChrDere08 6341352 6343599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0386 393 528 C3H Transcription Factor Family AT2G15530 45.714 1.37e-34 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0386 08 6341352 6343599 Dere08g0386 08 6341352 6343599 ECH