Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0360 ATGTGCTTAGCTGGATGCCACTGTTACAGTTCGGGTTCCCCCTTAATGGGCCAGCTGGAACGCCACTCCCTCCTGCACATGGCCAGCTACTTCTTGACAAACAATGAATCTTACCTTTCTGTTGCCGTGGTGATTTCGATGACTGTGGGACCCACTTGTGGGCCCACTATTTTCGTCTTCTGTTTGCCACCTGGAGACCTCGTTGTAGTTTCATTCAAAGGCATTGCTGAAAGATACGAAGTAGAGAGCTGGGAGAAAAAGACATTGATAGGAAATATTTCAGCCTTGTGTTATTTGGTTAGTGTGAAAATGTCGCATTCTGGAAAGCCCGATTCGGAGATAGGGTTCGACGGCCTCAACGATCGATTTCGCGACTCACTGAGCTGCGAGGCCAACAAGCCGGATTTTCGCGAGCTCGATCTAGGTTCGCCGGTTTCGCCATTGCGGGCTTGTAAGAGCGGACCTGCTGCGAGTGGACTTTCCACTACTACCAGTAGTAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCAATGGGTGTAACCCGGTCGCGAAAAGATCCGATTCAGGTGCGAACAACCACTCCGGCGAGCTCTCGGGCTCCAGTGAGAACAGCCCCACTGCCGCAGAGAGCCTTCGATCTGCGGGGAACGCTAGGAACTTCAAATCGGGTCACGCGAGATCCGATTCTGGAACCACCCCGCCATTGATATACTCGGGTCAGAGTTCATCTGTCACATCACCGGCGTTGAATGTTCTCCCTACCGGCAATATCTGTCCGTCCGGCAAGATTCTGAAGACGGGCATGGCGGCCAATCGGACCTCAAGGACGGACGTTTTGGGCTCCGGTGCCGTAAATTACGGACACGGAAGCATAATGCGGGGCGGTGGAGCATCCAAGCCTGCCGCTGGTGAGGCGACGGTTGTGACAAATGCAAGGGCAACCAGTGGAGGGGGTTTCAAAGAGCCTGGGAAGAAAGTGGGGGCGAGTGTGGATCCAGAAGAGGTTAAGAGAGCGGGGAACGAGCAGTACAGAAGCGGTCACTTTATGGAGGCATTGAGTCTCTACGATCGGGCAATTGGATTGTCGCCCGGTAGTGCTTCCTACCGTAGCAACCGGGCGGCAGCGTTAACGGCTTTGGGTCGGTTGTCTGAGGCAGTGAGGGCATGCGAGGAGGCTGTGAGGTTGGATTCTAATTATGGAAGGGCACATCAGCGTCTGGCTTCTCTTTTTCTCCGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTATATTGTCATGGACTGCAGCCGGAACCTTCTGAGTTGCAGAAGTTGCAATCGGTGGAGAAGCATATTAGCAAATGTACCGATGTTCGAAAAGTAGGTGATTGGAAAAGTGTCCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAGCTCCACCAAATTGATGATGCTGAATCGATTCTGTTAACTATTCCAAAAACAGAATCACAATCTAAATCCTCTTCTCAGGCAAGATTTTTTGGGATGCTTTCTGAAGCTTATTCCTTCTTTGTCAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGTCTGATTGATCCCCGGAACATTGAAGTTGCTGTTTTACTCACCAATGTAAGGATGGTGGCTAGAGCTCGAGCACGTGGGAATGACCTTTTCAAAGCCGAAAGGTTCACTGAAGCTTGCTCTGCTTACGAGGAAGGTTTGAGGCTGGACCCTTCAAATGCCGTACTCTATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTAAATATCCAACCAAATTATACAAAAGCACTTCTTCGAAGGGCGGCCTCAAACAGAAAGCTAGAGAGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGAAGAGAACTTCCTGATGACAATGAAGTTGCTGAAGCTCATTTCCACGTTCAAGTTGCATTAAAGAAATCTCGTGGGGAAGAAGTTTATAATTTGAAATTCGGTGGTGAAGTGGAGGAAGTCTCTGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTATCAGGCGTATCTGTTGTCCATTTTGAAATTGAATCTAACTCGCAATGCAAACAAATATCACCATTTGTGAATATACTTTGCAGTCGATATCCTTCTATTAACTTTCTCAAGGTGGATATTCACAAAAGCCCAACAGTTGCAACTGCTGAGAACGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGCAGCAGAGTGAAGGAAATCATATGCCCTAGTCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2418 0.4843 MCLAGCHCYSSGSPLMGQLERHSLLHMASYFLTNNESYLSVAVVISMTVGPTCGPTIFVFCLPPGDLVVVSFKGIAERYEVESWEKKTLIGNISALCYLVSVKMSHSGKPDSEIGFDGLNDRFRDSLSCEANKPDFRELDLGSPVSPLRACKSGPAASGLSTTTSSSSSSSGSVSGRNGCNPVAKRSDSGANNHSGELSGSSENSPTAAESLRSAGNARNFKSGHARSDSGTTPPLIYSGQSSSVTSPALNVLPTGNICPSGKILKTGMAANRTSRTDVLGSGAVNYGHGSIMRGGGASKPAAGEATVVTNARATSGGGFKEPGKKVGASVDPEEVKRAGNEQYRSGHFMEALSLYDRAIGLSPGSASYRSNRAAALTALGRLSEAVRACEEAVRLDSNYGRAHQRLASLFLRLGQVENARKHLYCHGLQPEPSELQKLQSVEKHISKCTDVRKVGDWKSVLREVDAAVAAGADSSPQLFMCRAEALLKLHQIDDAESILLTIPKTESQSKSSSQARFFGMLSEAYSFFVRAQIEMALGRFENAVTAAEKAGLIDPRNIEVAVLLTNVRMVARARARGNDLFKAERFTEACSAYEEGLRLDPSNAVLYCNRAACWFKLGQWERSIEDCNQALNIQPNYTKALLRRAASNRKLERWEEAVKDYEVLRRELPDDNEVAEAHFHVQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLSGVSVVHFEIESNSQCKQISPFVNILCSRYPSINFLKVDIHKSPTVATAENVRIVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSF 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0360 805 SUPERFAMILY TPR-like 333 561 IPR011990 GO:0005515
Dere08g0360 805 ProSiteProfiles TPR repeat profile. 605 638 IPR019734 GO:0005515
Dere08g0360 805 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 124 802 IPR044534 -
Dere08g0360 805 Pfam Tetratricopeptide repeat 605 638 IPR001440 GO:0005515
Dere08g0360 805 CDD TRX_family 710 797 - -
Dere08g0360 805 Coils Coil 645 665 - -
Dere08g0360 805 FunFam TPR repeat-containing thioredoxin TTL4 697 804 - -
Dere08g0360 805 MobiDBLite consensus disorder prediction 152 249 - -
Dere08g0360 805 Pfam Tetratricopeptide repeat 339 399 - -
Dere08g0360 805 SMART tpr_5 401 433 IPR019734 GO:0005515
Dere08g0360 805 SMART tpr_5 333 366 IPR019734 GO:0005515
Dere08g0360 805 SMART tpr_5 605 638 IPR019734 GO:0005515
Dere08g0360 805 SMART tpr_5 639 672 IPR019734 GO:0005515
Dere08g0360 805 SMART tpr_5 367 400 IPR019734 GO:0005515
Dere08g0360 805 SMART tpr_5 571 604 IPR019734 GO:0005515
Dere08g0360 805 SMART tpr_5 525 558 IPR019734 GO:0005515
Dere08g0360 805 SUPERFAMILY Thioredoxin-like 608 803 IPR036249 -
Dere08g0360 805 Pfam Thioredoxin 710 793 IPR013766 -
Dere08g0360 805 Gene3D Glutaredoxin 698 804 - -
Dere08g0360 805 Gene3D Tetratricopeptide repeat domain 331 691 IPR011990 GO:0005515
Dere08g0360 805 ProSiteProfiles TPR repeat profile. 333 366 IPR019734 GO:0005515
Dere08g0360 805 MobiDBLite consensus disorder prediction 156 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0360 Dere-ChrDere08 6058592 6065055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0360 570 715 U-box Gene Family AT3G07370 29.508 1.11e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0360 08 6058592 6065055 Dere07g1248 07 16177014 16180258 CCT
Dere08g0360 08 6058592 6065055 Dere08g0360 08 6058592 6065055 ECH