Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0343 ATGAAAGTTTTCCGTTCGCGTAAATTCTCCAGATCCTTAATGGAAACTGGAGCCCTAGAGGAAGACGAGCGTCGGAACTTGATCGGTAGCGCCGGCGTGTCGGAGGCCGGGCAGGAACCGGCGTACGGAAATGCGTGGTCCACCATGCTGCCGGAGCTGCTCGGGGAGATCATACGGCGAGTGGAGGCAAGCGAGGAGCAGTGGCCCGACCGCCAGAACGTTGTCGCTTGTGCGTGCGTCTGCAAGAGGTGGAGGGATGTGACCCGAGAGATCGTACGGTCCCCTTCTGGGAGCGGCAAAATTACTTTCCCTTCTTGTCTTAAACAGCCAGGACCACGTGATTTTCCCCACCAGTGTCTCATAAAGCGCAACAAGAAGACTGCAACATTTTACCTATATCTTGCTTTTACACCATCTTTCACAGATGAAGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGCGGTGCTAATTTTGAATATATCATATCACTTGCTGATGATGACTTATCCCAAGGAAGCAATGCTTATGTCGGAAAGTTAAGCTCGGATTTTCTTGGTACCAAATTCACAATCTATGACAGCCAGCCACCCCATAACGGTGCAAAGCCATCAAGCAGTAAGGCAGGCCGGCGATTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCATACAAGTTCAACCTGTTGAAATCAAGGGGGCCAAGGAGGATGGCTTGTTGGATGAAGTTACCCTTTCCTTCGTTAGGTGAAAATTCAGATAGCGAAATTTTGGATACTGATAAGATGATCACAAAAGAAAATGCTGCTTCTGGATACTCAGTCCTTAAAAACAAAGCTCCCAGATGGCATGAGCATTTGCAGTGTTGGTGCTTGAACTTTCATGGCCGCGTGACTGTAGCATCAGTGAAGAATTTCCAGCTGGTTGCTACAGTAGACCAGAGCCAACCAGGTGGGAAAGGAGATGAGGAAATGGTTCTCCTCCAATTTGGGAAGGTAGGGGATGATACTTTTACCATGGACTATAGACAGCCCTTATCAGCCTTCCAGGCCTTTGCCATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTAA 1128 0.4902 MKVFRSRKFSRSLMETGALEEDERRNLIGSAGVSEAGQEPAYGNAWSTMLPELLGEIIRRVEASEEQWPDRQNVVACACVCKRWRDVTREIVRSPSGSGKITFPSCLKQPGPRDFPHQCLIKRNKKTATFYLYLAFTPSFTDEGKFLLAARRYRRGANFEYIISLADDDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGAKPSSSKAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMACWMKLPFPSLGENSDSEILDTDKMITKENAASGYSVLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEEMVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0343 375 CDD F-box_AtTLP-like 46 90 - -
Dere08g0343 375 SUPERFAMILY Tubby C-terminal domain-like 96 375 IPR025659 -
Dere08g0343 375 ProSitePatterns Tub family signature 2. 360 375 IPR018066 -
Dere08g0343 375 Gene3D Tubby Protein; Chain A 102 375 IPR025659 -
Dere08g0343 375 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Dere08g0343 375 PRINTS Tubby superfamily signature 285 302 IPR000007 -
Dere08g0343 375 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Dere08g0343 375 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Dere08g0343 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Dere08g0343 375 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Dere08g0343 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Dere08g0343 375 PANTHER TUBBY-RELATED 20 373 - -
Dere08g0343 375 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
Dere08g0343 375 Pfam F-box domain 51 92 IPR001810 GO:0005515
Dere08g0343 375 Pfam Tub family 107 370 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0343 Dere-ChrDere08 5908131 5912185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0343 41 375 TUB Transcription Factor Family AT1G53320 77.126 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere08g0343 Tub 2e-100 CL0395