Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0308 ATGTCAAGCTCCAAACTTGTCTCTGTTCTCTTCTTCGGGTTTCTGGTTCCGAGTTTCTTCACAGATTTTCGATCAAACGCTCAACTTATACCACAGGATGAAGTGAAAGCTCTGCAGGCAATATCGGACCAACTAACAAACCTGAATTGGAAGGTAACCCAACGGTCATGCAGTGGTGACGGAGGGTTTAGTAACGCCGTTACCATTCCCTCCAAAATCGTCAGAAACGTTACTTGCAACTGCACCTTCCAAAGCGGCACCGTTTGCCATGTTACAAATATTTTACTGAAAGGTCTAAATATATCTGGAGTTATACCCATTGAATTTGGAAACCTCACTCAGCTGAACGAACTTGATCTCACTCGCAATTATCTCAATGGCACAATTCCAACGATTTTCACGCGCATCCCTATTGTCATTCTGTCCCTTTTGGGGAATCGAATTAGTGGTTCAATTCCTGCGGAATTTGGTGAAATTGCTACTCTAAAGGAGCTGATCCTGGAAGATAATCAGCTTGGAGGACCTCTTCCTCCAAGCCTTGGAAATCTGAGCAACTTACAGAGATTACTTCTTTCTGCAAATAATTTTACAGGGACAATACCAGAAACATTTCGCAATCTAAAGAACCTGACTGATTTTAGGATAGATGGGAGCACCTTATCAGGGAAGATACCAAGTTTAATTGGGAACTGGACCAAAGTTCATGTTTTTGTTAGGAATATGCAGGGCACAGGCATGGAAGGCCCAATTCCTTTTACCATATCTGAGTTGAAAAATTTGACTGAATTGAGAATATCTGACTTGAATGGAACAACAACCATGACATTTCCTGATCTAAAGAATTTGAAGAGTTTGGAAAGACTGATATTGAGAAACTGCTTAATTACTGGTACCATTCTAGATTACTGGAGGGAAATACCAAACTTAAAAACTCTAGACTTGAGCTTCAATAGTTTGACTGGTTCAATCCCTGATTCATTTCAGGACTTGAAAGCAATAAATCACATGTTTCTGACTAACAATTCTCTAAGTGGAGTGATTCCAGGATGGATACTAGACAACAAACATAATATTGATTTATCTGACAACAACTTTACAGAAGCTTCTGCAACTAGTTGCCAGCTATTGGATGTGAACTTAGCTTCTAGCCTCTCCTCTTCAGCAAGCAATTCACTCTTTTGTTTGAAGAAGGACCTACCTTGTGCAGCTCAGCATTATTCATTGTTCATAAACTGTGGAGGACCCAAGATGGAGATTGACGGGAATGTATATGAAGAAGATCTCAACCATGAAGGCATTTCACACTTTGATCTTCATAACAAATGGGCTTATAGCAGCACAGGAGTGTATATGAATAATGATAATGCTGATCATGTAGCAACAAATACATTTTCTTTGCATATTAATGACTCAGCGTACTACCAAACGGCCCGCCTTAGCCCTCTGTCTCTTAAGTACTATGGCCTTTGTATGCTGAAGGGAAATTATAAAGTAAAGCTCCATTTTGCTGAGATCATGTATTCTGATGACCAGACTTTTAGCAGCCTTGGTATTCGCATATTTGATGTCTCAATTCAAGGTTTTAAATACTTGAAAGATTTTAACATTGCAAAGAAAGCTGGTGGAGTTGGTAAGGGAATCACTGAGGAATTTGATGTTGATGTGAATGATACCACTTTGGAGATCCATTTATACTGGGCAGGTAAAGGAACTACTGCCATTCCTGACAGGGGTGTATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTCAAAATTCCTTCAAAAGGGTTGTCTGCTGGAGCTATTGTTGGAATTGTGGCTGGATCATGTGTTTTCCTCATACTGGTACTAATTGTCCTTCGAAAGAAGGGTTTCCTTGGTGGGAAAGATCCAAGAGACAAAGAACTTTTAGATCTTAAAACAGGTTATTTTTCTCTAAGACAAATTAAAGCTGCTACCAATAACTTTGATACAACAAATAAGATTGGGGAAGGAGGCTTTGGGCCAGTATACAAGGGTATACTGTCAGATGGTGTTGTCATTGCTGTCAAGCAACTCTCTTCCAAATCAAAGCAAGGAAACCGTGAGTTTGTTAATGAAATAGGAATGATATCTGCTTTGCAACATCCAAATCTCGTAAAGCTTTATGGCTGTTGCATTGAAGGAAACCAATTGCTGCTTATATATGAATACATGGAGAACAATAGTCTTGCTCGAGCACTTTTTGGTCGTGATGAACAAAGGCTACACTTGGACTGGCACACAAGAATGAAGATTTCTTTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAGTCAAGGTTGAAAATAGTACATAGGGATATTAAGGCAACAAATGTCTTACTTGATAAGGATCTGAATGCCAAAATCTCTGACTTCGGTTTAGCAAAGCTCGATGAAGAAGAGAATACCCATATAAGCACACGGATAGCAGGAACAATTGGTTATATGGCTCCTGAATATGCTATGAGGGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTCGGAGTTGTTGCTTTGGAGATTGTTAGTGGGAAGAGCAACACAAATTACAGGCCAAAAGATGAATTTGTTTATCTTCTTGATTGGGCCTATGTTCTCCAAGAGCAAGGAAGCCTTCTAGAACTGGTGGATCCTAGTCTTGGTTCGAACTACTCCCGAGAGGAGGCCATGAGAATGCTGAACTTGGCACTATTGTGCACCAACCCATCTCCCACCCTCAGACCATCCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAATCTCCAATCCAAGCACCAATAATCAAGCGCAGAGATTCAAGCCAGGAGCAGGATGCAAGGTTCAAAGCCTTTGAGATGCTGTCACATGATAGCCAAACATCTAAATTCTCTCAAGAAAGTATGGAACAAAGAGGCCAGTCAATGGATGGGCCATGGGCTGACTCCTCAATATCTCTTCCAAGTAGAGATGATTATTCTACATCCAGTAAGCTTCTTCGAGATTAA 3024 0.4041 MSSSKLVSVLFFGFLVPSFFTDFRSNAQLIPQDEVKALQAISDQLTNLNWKVTQRSCSGDGGFSNAVTIPSKIVRNVTCNCTFQSGTVCHVTNILLKGLNISGVIPIEFGNLTQLNELDLTRNYLNGTIPTIFTRIPIVILSLLGNRISGSIPAEFGEIATLKELILEDNQLGGPLPPSLGNLSNLQRLLLSANNFTGTIPETFRNLKNLTDFRIDGSTLSGKIPSLIGNWTKVHVFVRNMQGTGMEGPIPFTISELKNLTELRISDLNGTTTMTFPDLKNLKSLERLILRNCLITGTILDYWREIPNLKTLDLSFNSLTGSIPDSFQDLKAINHMFLTNNSLSGVIPGWILDNKHNIDLSDNNFTEASATSCQLLDVNLASSLSSSASNSLFCLKKDLPCAAQHYSLFINCGGPKMEIDGNVYEEDLNHEGISHFDLHNKWAYSSTGVYMNNDNADHVATNTFSLHINDSAYYQTARLSPLSLKYYGLCMLKGNYKVKLHFAEIMYSDDQTFSSLGIRIFDVSIQGFKYLKDFNIAKKAGGVGKGITEEFDVDVNDTTLEIHLYWAGKGTTAIPDRGVYGPLISAITVTPNFKIPSKGLSAGAIVGIVAGSCVFLILVLIVLRKKGFLGGKDPRDKELLDLKTGYFSLRQIKAATNNFDTTNKIGEGGFGPVYKGILSDGVVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGRDEQRLHLDWHTRMKISLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKDEFVYLLDWAYVLQEQGSLLELVDPSLGSNYSREEAMRMLNLALLCTNPSPTLRPSMSSVVSMLEGKSPIQAPIIKRRDSSQEQDARFKAFEMLSHDSQTSKFSQESMEQRGQSMDGPWADSSISLPSRDDYSTSSKLLRD 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0308 1007 Pfam Malectin domain 407 587 IPR021720 -
Dere08g0308 1007 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Dere08g0308 1007 SUPERFAMILY Protein kinase-like (PK-like) 643 931 IPR011009 -
Dere08g0308 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 942 - -
Dere08g0308 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Dere08g0308 1007 Gene3D Ribonuclease Inhibitor 30 267 IPR032675 -
Dere08g0308 1007 Gene3D Ribonuclease Inhibitor 268 382 IPR032675 -
Dere08g0308 1007 SMART LRR_typ_2 183 206 IPR003591 -
Dere08g0308 1007 SMART LRR_typ_2 112 135 IPR003591 -
Dere08g0308 1007 SMART LRR_typ_2 306 329 IPR003591 -
Dere08g0308 1007 SUPERFAMILY L domain-like 77 384 - -
Dere08g0308 1007 Gene3D Phosphorylase Kinase; domain 1 631 734 - -
Dere08g0308 1007 Gene3D - 402 592 - -
Dere08g0308 1007 CDD STKc_IRAK 665 932 - -
Dere08g0308 1007 MobiDBLite consensus disorder prediction 961 1007 - -
Dere08g0308 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 734 - -
Dere08g0308 1007 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 31 269 - -
Dere08g0308 1007 Pfam Protein tyrosine and serine/threonine kinase 661 930 IPR001245 GO:0004672|GO:0006468
Dere08g0308 1007 ProSiteProfiles Leucine-rich repeat profile. 308 331 IPR001611 GO:0005515
Dere08g0308 1007 SMART serkin_6 659 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0308 1007 MobiDBLite consensus disorder prediction 961 999 - -
Dere08g0308 1007 ProSiteProfiles Protein kinase domain profile. 659 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0308 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 969 - -
Dere08g0308 1007 Gene3D Transferase(Phosphotransferase) domain 1 735 953 - -
Dere08g0308 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0308 Dere-ChrDere08 5324405 5335291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0308 23 996 Receptor kinase-like Gene Family AT1G53440 64.012 0.0 1254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere08g0308 PK_Tyr_Ser-Thr 2.9e-50 CL0016