Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0292 ATGAAGATTCAGTGCAGCGTGTGTGAAGCTGCAGAGGCGAAAGTTTTGTGCTGTGCGGACGAGGCGGCGCTGTGTTGGGAATGTGACGACAAGGTCCACGCTGCTAACAAGCTCGCCGGCAAGCACCAGAGAGTCCCTCTTTCTTGCTCTTCCTCTCACATGCCCAAATGTGATATTTGTCAGGAAACATTTGGCTATTTCTTCTGTCTAGAGGACCGGGCTTTGCTCTGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTCTCCACTCATCAGAGGTTTCTGCTCACTGGTGTGAGAGTAGGACTTGAAGCCACTGAGCCTGGTGCTTCCTCATCTTCCATTAAGTCACAGTCTGAGGGGAAAATGTCAGATGCAAAATCTTCTTCTGCCTCTAGAAACCTTTCCTCAATCCCCGAGTCTTCTGAATATAATGAAGTATTACCAATCCAAGGTGAAGGAGCTGCAGAATTTCAGCCTACTAAGGTGTCTTATGGTGGTGGTTCTACCGATGGAAACATCTCAAACTGGCCCATGGATGAATTTCTCGGTTTAAATGAATTCAGTCAGAATTATAATTACATGGACAGCGCACCATCCAAGGCTGACAGTGGTAAGCTTGGGGATTCTGATTCTCCCGGTTTGAAATCTAATGAAGAGGAAATAGATGACGAGTGCTTGGGGCGGGTTCCAAATTCAGTTCCTCAGATCCCCTCCCCTCCTACAGATTCAGGGTTATATTGGCCAAAAGACCCTCACTATTCATTTGACAATGCTATGTTTATTCATGTTCCTGACATATGCTTTTCTGACACACAACAGGCCAATAATCGGATTTTATTGAAATGGCAGAGGCAGCCATGA 873 0.4593 MKIQCSVCEAAEAKVLCCADEAALCWECDDKVHAANKLAGKHQRVPLSCSSSHMPKCDICQETFGYFFCLEDRALLCRKCDVAIHTANSYVSTHQRFLLTGVRVGLEATEPGASSSSIKSQSEGKMSDAKSSSASRNLSSIPESSEYNEVLPIQGEGAAEFQPTKVSYGGGSTDGNISNWPMDEFLGLNEFSQNYNYMDSAPSKADSGKLGDSDSPGLKSNEEEIDDECLGRVPNSVPQIPSPPTDSGLYWPKDPHYSFDNAMFIHVPDICFSDTQQANNRILLKWQRQP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0292 290 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere08g0292 290 FunFam B-box zinc finger protein 22 1 93 - -
Dere08g0292 290 CDD Bbox1_BBX-like 5 47 - -
Dere08g0292 290 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dere08g0292 290 MobiDBLite consensus disorder prediction 199 223 - -
Dere08g0292 290 Gene3D Classic Zinc Finger 1 93 - -
Dere08g0292 290 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Dere08g0292 290 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere08g0292 290 SMART bboxneu5 52 99 IPR000315 GO:0008270
Dere08g0292 290 MobiDBLite consensus disorder prediction 110 146 - -
Dere08g0292 290 CDD Bbox1_BBX-like 56 99 - -
Dere08g0292 290 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0292 Dere-ChrDere08 5112725 5115839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0292 1 270 C2C2-CO-like Transcription Factor Family AT1G78600 47.742 8.56e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere08g0292 zf-B_box 1.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0292 08 5112725 5115839 Dere08g0292 08 5112725 5115839 ECH