Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0268 ATGGGGTTGCTGAGTTATGTCGGACAATGGAGAGGCATTTTGAAGGAAGCGGTGGATCGGACAGCGATTACAGTGAAGTTCCTCTGCGTCCTGCACGTAACCAACGACTACCTTTGCTCCACTTCTCATGTGTACGGTCCTAGTATGCTCCCAACCTTGAATCTCACTGGCGATGTGCTACTCGCCGAGCATGTGTCTCCTCGATTGGGGAAGCTTGGACATGGTGATTTGGTGCTCGTTCGCTCTCCCTTAAACCCTAATCGGACTCTGACCAAACGCATTGTGGGCATGGAAGGGGATAGAATCACTTACTTTGATCCTAGGCATGGTGATATAGCTCAAACTGCTATGGTGCCAAAGGGCCATGTTTGGATCCAGGGGGATAATATCTACGCCTCCCGTGATTCACGGCATTTTGGTCCTGTTCCTTATGGCCTTATACAAGGAAAAGCGTTTTTTAGGGTTTGGCCACCTGATGGTTTTGGGCAGCTGGGTTACTAA 501 0.497 MGLLSYVGQWRGILKEAVDRTAITVKFLCVLHVTNDYLCSTSHVYGPSMLPTLNLTGDVLLAEHVSPRLGKLGHGDLVLVRSPLNPNRTLTKRIVGMEGDRITYFDPRHGDIAQTAMVPKGHVWIQGDNIYASRDSRHFGPVPYGLIQGKAFFRVWPPDGFGQLGY 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0268 166 Gene3D Umud Fragment, subunit A 35 163 - -
Dere08g0268 166 SUPERFAMILY LexA/Signal peptidase 38 164 IPR036286 -
Dere08g0268 166 CDD S26_SPase_I 44 151 IPR019533 GO:0004252|GO:0006465
Dere08g0268 166 FunFam Inner membrane protease subunit 1 35 163 - -
Dere08g0268 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere08g0268 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere08g0268 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere08g0268 166 Pfam Signal peptidase, peptidase S26 114 156 IPR019533 GO:0004252|GO:0006465
Dere08g0268 166 Pfam Signal peptidase, peptidase S26 23 105 IPR019533 GO:0004252|GO:0006465
Dere08g0268 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 9 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0268 Dere-ChrDere08 4847231 4849465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0268 49 165 MADS-box Gene Family AT1G29960 56.780 6.58e-43 137