Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0235 ATGGCTGCGGTTGCTGAGATTTCCGGTGATGCAGCAGCTGCCACCAAATTGGACTCAAAACCGAAGTCGGACTCCGAATTCAATGTGCAGAAACTCGTTGATATGTTCACAAAGTTGAATCCTTTGGCTAAGGAGTTTTTCCCATCATCGTATTCTCATCAGGATCTTCGATATCTGAGCTATAATCAATTCTCTTCCAACGATTTTCTGGTCAACAATAAGCCCTCAGATAATGACAATTACCCAAACAGCCGAAGGAGAAGAAATAATTTCGGTCAAGGAAGAAGGCTGAATGGAAGAGTCCATAAAGCTCAAAGAGAAGATAGCGTTAGAAGAACGGTATATGTTTCTGATATTGATCAACATGTAACAGAGGAGCGGCTTGCTGCCTTATTTACTAGTTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTCCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCGAGGTGCAAGAGCAGCTCTAAACCTTGGTGGCACTGTGCTTGGTTACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTACCTAGGTCAGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATAGATAAAAAGGTTTCTCAAGCCGAAGTGAAGAACTTTTTTGAAACAGCTTGCGGTGAGGTTACACGTTTGAGGCTTTTAGGGGATCATGTGCATTCAACACGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTATTGCACTAAATTGTAGTGGGATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGATCACTCGTCCAATATCATGTTGA 894 0.4284 MAAVAEISGDAAAATKLDSKPKSDSEFNVQKLVDMFTKLNPLAKEFFPSSYSHQDLRYLSYNQFSSNDFLVNNKPSDNDNYPNSRRRRNNFGQGRRLNGRVHKAQREDSVRRTVYVSDIDQHVTEERLAALFTSCGQVIDCRICGDPHSVLRFAFVEFADERGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQAEVKNFFETACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRITRPISC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0235 297 SUPERFAMILY RNA-binding domain, RBD 199 291 IPR035979 GO:0003676
Dere08g0235 297 CDD RRM2_CID8_like 205 286 IPR034825 -
Dere08g0235 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Dere08g0235 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 290 - -
Dere08g0235 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Dere08g0235 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Dere08g0235 297 Gene3D - 197 290 IPR012677 -
Dere08g0235 297 Gene3D - 66 188 IPR012677 -
Dere08g0235 297 MobiDBLite consensus disorder prediction 1 24 - -
Dere08g0235 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Dere08g0235 297 SUPERFAMILY RNA-binding domain, RBD 83 188 IPR035979 GO:0003676
Dere08g0235 297 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Dere08g0235 297 CDD RRM1_CID8_like 110 189 IPR034823 -
Dere08g0235 297 FunFam Polyadenylate-binding protein-interacting protein 11 77 189 - -
Dere08g0235 297 MobiDBLite consensus disorder prediction 72 103 - -
Dere08g0235 297 FunFam Polyadenylate-binding protein-interacting protein 10 203 281 - -
Dere08g0235 297 SMART rrm1_1 113 183 IPR000504 GO:0003723
Dere08g0235 297 SMART rrm1_1 210 281 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0235 Dere-ChrDere08 4360556 4364663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0235 109 266 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 4.97e-11 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0235 08 4360556 4364663 Dere08g0235 08 4360556 4364663 ECH