LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g0198	ATGCCTTGTTTTCCTTTCTCATTCGGTAGAAAGGTTAAATCTCCAGTGATACGAGATCCTGAAATTGATGAAGAATTATCAGGCATTCAAAATGTGAATTTTTATACCTACAAAGAACTAAGAATTGCCACTGAGGATTTCAGTCCAGCCAACAAAATTGGGGAGGGCGGTTTTGGTTCTGTCTACAAGGGACTGCTAAAAGATGGAAAAATAGCTGCTATCAAAGTTCTTGCAGCAGAATCAAGACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATCTCTGAAATAGAGCACAAAAATTTAGTTAAGTTATATGGCTGTTGTGTGGAAGACAGTCAAAGAATATTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACTCTCCTAGGTGGAGATCACAGTAATATCCCCTTTGACTGGAAAACAAGGTCTAGAATATGCATTGGAATTGCCTGTGGGCTTGCCTTTCTTCATGAGGAAGTAAGACCACATATTGTTCATAGAGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCAAAGATTTCAGATTTTGGGCTTGCCAAGCTTATCCCAGCAAACATGACTCATGTTAGTACACGTGTAGCAGGGACAATAGGTTATTTGGCACCAGAATATGCAATAAGGGGGCAGCTGACACGGAAAGCGGACATTTACAGTTTTGGTGTACTCCTTGTGGAGATTGTCAGTGGGAGATGTAATACAAATACACGATTACCAATAGGAGAACAGTACCTTCTAGAAAGGGCATGGGTACTTTATGAGCGTAGGGAATTGGTGGGGCTGGTAGACATATTACTACATGGGGAATTTGATGCTGAGGAGGCCTGTAAGATTCTGAAAATTGGCCTTCTTTGCACCCAGGATGTTCCAAAACTCCGGCCATCCATGTCTTCAGTGGTCAAGATGCTCACTGGTGAGATGGATGTTGATGACAGTAAGATAACAAAACCGGGCTTAATTTCTGACTTTATGGACCTTAAGGTTGGAGGAAAACCAAAAAGTGATGTTGATATGAAGACTTCTTCCTCCTATAATGCATCCTCTGCCTCAGACTACCAGGATACTACCATGTCGTCGGCTGCTTCAACTGCTGCAACTACAACCTTCAGTGTGCAATATGATCGTAGCATGTAA	1179	0.4131	MPCFPFSFGRKVKSPVIRDPEIDEELSGIQNVNFYTYKELRIATEDFSPANKIGEGGFGSVYKGLLKDGKIAAIKVLAAESRQGVKEFLTEINVISEIEHKNLVKLYGCCVEDSQRILVYNYLENNSLAQTLLGGDHSNIPFDWKTRSRICIGIACGLAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCNTNTRLPIGEQYLLERAWVLYERRELVGLVDILLHGEFDAEEACKILKIGLLCTQDVPKLRPSMSSVVKMLTGEMDVDDSKITKPGLISDFMDLKVGGKPKSDVDMKTSSSYNASSASDYQDTTMSSAASTAATTTFSVQYDRSM	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g0198	392	ProSiteProfiles	Protein kinase domain profile.	47	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0198	392	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Dere08g0198	392	FunFam	cold-responsive protein kinase 1	18	122	-	-
	Dere08g0198	392	Pfam	Protein kinase domain	50	250	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0198	392	Gene3D	Transferase(Phosphotransferase) domain 1	123	331	-	-
	Dere08g0198	392	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	30	358	-	-
	Dere08g0198	392	Gene3D	Phosphorylase Kinase; domain 1	16	122	-	-
	Dere08g0198	392	FunFam	cold-responsive protein kinase 1	123	334	-	-
	Dere08g0198	392	SUPERFAMILY	Protein kinase-like (PK-like)	27	318	IPR011009	-
	Dere08g0198	392	CDD	STKc_IRAK	53	320	-	-
	Dere08g0198	392	SMART	serkin_6	47	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0198	392	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g0198	Dere-ChrDere08	3501573	3504584	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g0198	21	321	Receptor kinase-like Gene Family	AT1G07650	57.426	1.44e-112	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere08g0198		Pkinase	1.1e-46	CL0016