Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0190 ATGGCAAGTCTGCTGAATTCGGTGTCTCCACATGCAAACATATCATCCAAAATAAAAGGGAAGTGTTGTTTTAGCTTCTATTCCCAGATTCTAAACATCCGTAGGGTTTTCCTCAACAGGGGATTTTCCAGGGTTTTGGCTTCTTCCCAGATTACTACTTCCCCAAAAGATGCTGTTTTTACCATGCCCAACTGGAGGGCAGGCAAGAATGACCCAAAAAGTAAGGAGCTCAGGCTTAATGATGCATTTCTTTATTTAGAGTATATGGTGGGCAAAGGCCACAAGCCTGATGTAGCTCAAGCAACCCAGCTCTTATATGATCTTTGCAAGGCTAATAAACTGAGGAAAGCTGTTAGAGTGATGGAGATGATGGTGGGTTCAGGTATTATACCTTATGCAGCTTCCTGTACATACTTGATCAATCACTTGTGCAAGAGAGGGAATGTTGGGCATGCAATGCAATTGGTTGAAAAGATGGAGGAAAATGGGTTTCCAGTTAATACTATTACCTATAACACTCTGGTTAAAGGGCTTTGCATGCAAGGAAATTTAAACAAGAGCTTGCAGCTTTTAGATAGATTAACAAAGAAGGGGTTGGTCCCAAATGCATTCACATATTCTTTTTTACTTGAAGCTGCTTATAAGGAGAGGGGAGTAGATGAAGCCATGAAACTTTTAGATGAGATAATTTCCAAGGGTGGGGAGCGTAATTTGATTAGTTACAATGTTTTGTTAACTGGGTTGTGCAAGGAAGGTAGAACTGAAGAAGCCTTTAAGCTTCTCAGGGAATTACCTGCTAAGGGTTTTAATCCTAGTGTTGTGAGTTATAACATATTGCTAAGGAATTTGTGCTATGAAGGGCGGTGGGGGGAGGCAAATGAGCTTTTAGCAGAGATGTATGGAGAGGATCGGTCTCCCTCTGTGGTTACTTACAACATATTAATTACTTATCTCGCCCTCCATGGAAGAACAGAACATGCTTTCAAGGTTTTGGATGAAATGACAAGGAGTGGATTCAAGGCAACTGCCACGAGCTATAATCCAATAATTGCTCGTCTCTGCAAGGAAGGGAAGGTTGATATTGTAGTCCAGTGTCTAGACCAAATGATTTATCGGCACTGTATTCCTAATGAAGGAACATACAATGCTATTGCTATACTTTGCAACGAAGGGAAAGTGCAAGAGGCGTTCTCCATAATCCAAAGCTTGGGTAATAAACAAAACTCCCCTATGCATGATTTCTACAAAAGTGTGATTTGGAGCATGTGCAGGAAAGGGAACACATATCCAGCCTTTCAACTATTATATGAAATGACAAAGTATGGATTTACACCAGATTCTTATACTTATTCATCTTTGGTAAGAGGAATGTGTAGGGAAGGAATGTTGAATGGAGCTATTGAGATATTCAGGGTTTTGGAAGAAAATGGGTACAAGCCTGATACTGATAACTATAACGCACTTTTACTTGGCTTTTGCAAATCCCTAAGAACAGACTTGTCAATGGAGATATTTCAGATGATGATTGACAAAGGATGTATGCCAAATGAGGCAACTTATACCATTCTCATTGAAGGGCTTGTTTTTGAAGAAGAAATGGATATGGCATCCAAGCTTTTGAAAGAGTTGTATCTCAAGGGAGTTCTGAGCCAAAGTACCGTGGAGAGACTTATTATGCAGTATGACCTCAAGCATTTACCAGAGTAG 1707 0.4025 MASLLNSVSPHANISSKIKGKCCFSFYSQILNIRRVFLNRGFSRVLASSQITTSPKDAVFTMPNWRAGKNDPKSKELRLNDAFLYLEYMVGKGHKPDVAQATQLLYDLCKANKLRKAVRVMEMMVGSGIIPYAASCTYLINHLCKRGNVGHAMQLVEKMEENGFPVNTITYNTLVKGLCMQGNLNKSLQLLDRLTKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDEIISKGGERNLISYNVLLTGLCKEGRTEEAFKLLRELPAKGFNPSVVSYNILLRNLCYEGRWGEANELLAEMYGEDRSPSVVTYNILITYLALHGRTEHAFKVLDEMTRSGFKATATSYNPIIARLCKEGKVDIVVQCLDQMIYRHCIPNEGTYNAIAILCNEGKVQEAFSIIQSLGNKQNSPMHDFYKSVIWSMCRKGNTYPAFQLLYEMTKYGFTPDSYTYSSLVRGMCREGMLNGAIEIFRVLEENGYKPDTDNYNALLLGFCKSLRTDLSMEIFQMMIDKGCMPNEATYTILIEGLVFEEEMDMASKLLKELYLKGVLSQSTVERLIMQYDLKHLPE 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Dere08g0190 568 Pfam PPR repeat 108 129 IPR002885 -
Dere08g0190 568 Pfam PPR repeat 204 233 IPR002885 -
Dere08g0190 568 SUPERFAMILY HCP-like 82 278 - -
Dere08g0190 568 Gene3D Tetratricopeptide repeat domain 474 545 IPR011990 GO:0005515
Dere08g0190 568 Gene3D Tetratricopeptide repeat domain 404 473 IPR011990 GO:0005515
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Dere08g0190 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 237 453 - -
Dere08g0190 568 Pfam PPR repeat family 480 527 IPR002885 -
Dere08g0190 568 Pfam PPR repeat family 237 284 IPR002885 -
Dere08g0190 568 Pfam PPR repeat family 134 179 IPR002885 -
Dere08g0190 568 Pfam PPR repeat family 306 347 IPR002885 -
Dere08g0190 568 Pfam PPR repeat family 415 459 IPR002885 -
Dere08g0190 568 Gene3D Tetratricopeptide repeat domain 73 182 IPR011990 GO:0005515
Dere08g0190 568 Gene3D Tetratricopeptide repeat domain 183 286 IPR011990 GO:0005515
Dere08g0190 568 Gene3D Tetratricopeptide repeat domain 287 396 IPR011990 GO:0005515
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 274 307 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 169 203 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 345 378 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 135 167 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 485 517 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Dere08g0190 568 NCBIfam pentatricopeptide repeat 448 482 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Dere08g0190 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0190 Dere-ChrDere08 3409131 3410837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0190 200 560 Glycosyltransferase AT1G05670 26.963 5.01e-38 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0190 08 3409131 3410837 Dere08g0190 08 3409131 3410837 ECH