Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0185 ATGTCCTCCTCTTATTCTTCTTTAGGTGTTGAAATTACTACAAAGCAGAAAGACAGTGATGATCAATTGGATCATCAGCCTTCCTCCATAATCAAACCTGGAACTAATTATTCCATTCCTTTCAATGTTTCTGAAGCTTCTCTTTCATTTTCTTACTTGGATGGAAATCATCATATTGATGAGAAACCTGTAAGGGATAATCCATCATCTTTAGGGTCAGTGAACTGGATTGAGTTTGATGCAGCCATGAAGAATGGCCGATCAGGAGGAGACAAGTGGAGAAGCAAAGTGACTCCTTCACCCCTCCCTCACCACATCGTCGTTGAGAGAAAGCGAAGAGAAGACCTTAACCAGAGATTCTTGGCTCTTTCAAAAGTAGTCCCAGGCAAGAAAAAGAAGGACAAGGCTTCAATCCTTGGAGAAGCTGTGAAGTACATGAAAGATCTTCAAGAACGCATCAAGAACCTTGAGGAAAGGACCAAGAAGAAAGTGGTGGAATCAGTGGTTTATGTGAAGAGATCATCATCATCATCTACTAATCTATATTTACCTTACAACAGCAATAATTATGGTAATTATTGTTACGTGGAATCAAATGACGACAACTTCAGCAACCAAAAAAGCAGACTGCTTCCAGAAATAGAAGCCAAAATGATAGAGAGAAGTGTGCTTATTCGAGTTCATTGTGGGAATCACAGTGAAATTCTTCCAACGCTGTTGTCTGAGATAGCAAAGCTTCATTTGATCGTTGTCACTACCAATGTTGTCCCTTTTGGGACTGATACTGACATCACTGTCATTGCTCAGATGGGAGATGATTTTTGGATGAAACCGAAGGATATTGTGGAATACCTGCGACTCGCACTGCCAGATTTCATTTGA 882 0.4036 MSSSYSSLGVEITTKQKDSDDQLDHQPSSIIKPGTNYSIPFNVSEASLSFSYLDGNHHIDEKPVRDNPSSLGSVNWIEFDAAMKNGRSGGDKWRSKVTPSPLPHHIVVERKRREDLNQRFLALSKVVPGKKKKDKASILGEAVKYMKDLQERIKNLEERTKKKVVESVVYVKRSSSSSTNLYLPYNSNNYGNYCYVESNDDNFSNQKSRLLPEIEAKMIERSVLIRVHCGNHSEILPTLLSEIAKLHLIVVTTNVVPFGTDTDITVIAQMGDDFWMKPKDIVEYLRLALPDFI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0185 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Dere08g0185 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 167 IPR036638 GO:0046983
Dere08g0185 293 Gene3D - 103 169 IPR036638 GO:0046983
Dere08g0185 293 PANTHER BHLH TRANSCRIPTION FACTOR 43 289 - -
Dere08g0185 293 MobiDBLite consensus disorder prediction 1 31 - -
Dere08g0185 293 Pfam Helix-loop-helix DNA-binding domain 105 150 IPR011598 GO:0046983
Dere08g0185 293 Coils Coil 139 166 - -
Dere08g0185 293 SMART finulus 106 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0185 Dere-ChrDere08 3377465 3380434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0185 105 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.444 1.23e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g0185 HLH 3.8e-12 No_clan