Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0179 ATGCAGTATCTACTTTGCGGCTTACATTTGAAGAAGAGGTTCAAATGCTTAAGGACCAGTGGCGGGGAAAGTGCTATTCCTTCTTATCTTCGATTGACTCATTTGTCCCTACTAGGGTTTATCGAGGGTTTCAATTTCTCTTGCTGTGCCCTAGCAATGGCGAAACCTGGGCGAGGTCGTCGCTCACCGCCTTCAGGTTCCATTTCGGGCTCTTCGTCTCGCTCTCGGTCCTCCTCTCCCTCCGATTCCCGCTCCAGCTCTCGCTCCCGCTCCCTTTCCCGGTCTCCCTCTCGTTCCAGATCCTTCTCTTCCTCCTCTTCTCCGTCCCGCAGTGTCAGTTCCCGAAGCCGAAGCCCCCCTCCTCAAAGGAGGAAGAGTCCTGCTGAAGTAGCTAGGCGAGGTAGATCTCCTCCATCCCATTCTAGAAGGACCTCTCCACCACCAAGGAAACCTTCTCCTGTTCGTGAGTCGCTTGTTCTTCACATAGACAAACTCAGCAGGAATGTTAATGAAGGCCATTTGAAAGAAATATTCAGTAACTTTGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATAGAACGGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAGGCCTTACTATACATGGATGGTGCTCAAATAGATGGAAACATTGTTAAGGCCAGATTTACCCTCCCTCCAAGACAAAAGGTTTCACCACTCCCAAAGGCTTCTGCTGTTGCTCCAAAGAGAGATGCTCCTAGGACTGATAATGCTAGTGCAGATGCTGAAAAGGATGGGCCGAAGCGACAGAGAGAATCTTCTCCTCGAAGAAGACCTCCTTCGCCACGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCTGTTCGTCGTCGATTGGACTCTCCTTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGCAAGAGGCCGTTCTCCGTCTCCGCCGAGGCGCCTTAGATCCCCTCCAAGGGTTTCACCTAGACGGATTCGTGGAAGCCCAGCTCGCAGACGATCTCCTCCTCCTCCTCCACGTCGCCGTTCACCTCCAAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATCAGTCGCAGACGTAGTCGCTCTCCAATACGTAGGTCTGCACGATCACGTTCTAGATCCTTCTCACCACGGAGAGGTCGACCACCTGTGAGACGTGGAAGGTCATCATCCTACTCTGATTCACCAAGTCCGCGCAAGGTATCCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCTTTAAGAGGAAGAGGCAGTAGCAATAGCAGCAGCAGCAGTTCACCCCCCCCAGCTCGCAAACCGTAG 1389 0.5227 MQYLLCGLHLKKRFKCLRTSGGESAIPSYLRLTHLSLLGFIEGFNFSCCALAMAKPGRGRRSPPSGSISGSSSRSRSSSPSDSRSSSRSRSLSRSPSRSRSFSSSSSPSRSVSSRSRSPPPQRRKSPAEVARRGRSPPSHSRRTSPPPRKPSPVRESLVLHIDKLSRNVNEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPLPKASAVAPKRDAPRTDNASADAEKDGPKRQRESSPRRRPPSPRRRSPVPRRVGSPRRPDSPVRRRLDSPYRRGDTPPRRRPVSPARGRSPSPPRRLRSPPRVSPRRIRGSPARRRSPPPPPRRRSPPRRARSPPRRSPISRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSRSRSPRRPLRGRGSSNSSSSSSPPPARKP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0179 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 228 IPR000504 GO:0003723
Dere08g0179 462 MobiDBLite consensus disorder prediction 55 156 - -
Dere08g0179 462 FunFam Serine/arginine-rich splicing factor SR45 55 243 - -
Dere08g0179 462 SUPERFAMILY RNA-binding domain, RBD 144 240 IPR035979 GO:0003676
Dere08g0179 462 CDD RRM_RNPS1 160 232 IPR034201 -
Dere08g0179 462 MobiDBLite consensus disorder prediction 343 413 - -
Dere08g0179 462 MobiDBLite consensus disorder prediction 442 462 - -
Dere08g0179 462 Gene3D - 65 242 IPR012677 -
Dere08g0179 462 MobiDBLite consensus disorder prediction 64 121 - -
Dere08g0179 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 236 IPR000504 GO:0003723
Dere08g0179 462 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 54 317 - -
Dere08g0179 462 MobiDBLite consensus disorder prediction 258 283 - -
Dere08g0179 462 MobiDBLite consensus disorder prediction 239 462 - -
Dere08g0179 462 MobiDBLite consensus disorder prediction 300 325 - -
Dere08g0179 462 SMART rrm1_1 159 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0179 Dere-ChrDere08 3274678 3287894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0179 162 236 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 1.59e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0179 08 3274678 3287894 Dere08g0179 08 3274678 3287894 ECH