Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0162 ATGGGTGGCGAAGAATTCAGGAAGGACGACTTTATGGAAGATGATGATGAAGTGGAACTTCCAGGGTTTCGGTTCCATCCCACAGATGAAGAACTTGTGGGTTTCTATCTTCGAAGGCAGCTTGATAAGAAACCCATCAGGATCGAACTCATCAAGCAGATTGATATTTACAAATACGACCCTTGGGATCTTCCAAAAGCGAGCAGTACAGGAGGGGAGAAGGAGTGAGGCAGTGCAGGCAAAGGCACCAAAACTGACTGGATGATGCACGAGTTTCGCCTCCCTACCCATCATGACTTCACCTCCACCACCAAGAACAATGTTACCACCACCGCCGCCACCACCACCATTGCCCAGGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAGCGAAATATTTCAGCAAGGAAGCACATACCAGACTGGAGATCACAAGTAGGAGGCAAGCAGCGTCATTCTTCAATAGACAAGAGCACAAGAATGAGTAGTAACAGTACTGTGGAGAGTGATACCACTAGTTACGATAACAAAGAAGCTTACATAAATTTTGGAGGAAGCAGTGATCATAATCATGGCCATTATTATTATCAGAATAATGATCATCATGAGCAAAAACCCGCAGTCCTCAATGGCAACAGTACAAGCAATAATATCTCCCCACGCTCTCTCACTTTCTGCCATTTCAATACTCTCTCTCTTAAACATCACTCTCTTGTTCTACCATCTATTGCATTAAATTTCACGAACGCAAAGATGTTAGATCGTTATTCGGTTGCTTTATTTTTGATACTTTCCTGGCTTGTTGTGGGATTAAATGCAAGTGCTGGTGACGCTAATCCGCGTTATAGGGATTGTGTGAAACATTGCGATGAAACAGGATGTGTTGGCCAAAGATGTTTTCCAAACTGTAAATTTTCTGGAGCTGGACTTGTCACGGATCTTCCATGGTACATGCAAGAACCGCTTTACTTGCAGTGGAAAAAATGGGATTGCCAAAGTGATTGTCAGTACTATTGTATGCTTGACATAGAGAAAGAAAAAGAACTACTTAATGGTGTTCCAGTCAAATATCATGGTAAATGGCCCTTTAGGCGTATCTATGGGATGCAGGAGCCTGCTTCTGTGGCTTTCTCTGTTCTCAACCTTGCGGCGCATTTTCATGGTTGGGTATCCTTTTTCATTCTTCTATACTATAAAATGCCTCTAAAAGAAGGTAAGAAGGCATACTACGAGTATGCTAGTCTTTGGCATATCTATGGGCTGTTATCAATGAACTCCTGGCTGTGGAGCGCTGTTTTTCATAGTCGAGATGTTGATCTGACCGAGAAATTGGACTACTCATCTGCAGTGGCTCTCCTTGGATACTCCCTTATTTTGGCCATATTACGAAGTTTCAATGTTAGGGATGAGGCTACCAGAGTTATGATTTCTGCTCCACTGATTGCTTTTGTGACCACTCACATATTGTTCCTAAACTTCTATAAACTCGACTATGGATGGAATATGAAAGTTTGTGTAGCGATGGCTGTGGCACAACTCATCATTTGGGCTGTTTGGGCTGGTTTTAGCCACCATCCTTCGGGGTGGAAACTATGGTTGGTTGTTTTTGCAGGTGGTATTGCGATGCTCCTAGAACTATATGACTTCCCCCCATATCAAGGACTTCTGGATGCTCATGCTCTTTGGCATGCCACCACTATTCCTCTAACCTACATTTGGTGGAGTTTCATTAGGGACGATACTGAATTTCAAACCTCAAATCTTTTGAAGAAGGCCAAGTAG 1785 0.4297 MGGEEFRKDDFMEDDDEVELPGFRFHPTDEELVGFYLRRQLDKKPIRIELIKQIDIYKYDPWDLPKASSTGGEKEXGSAGKGTKTDWMMHEFRLPTHHDFTSTTKNNVTTTAATTTIAQEAEIWTLCRIFKRNISARKHIPDWRSQVGGKQRHSSIDKSTRMSSNSTVESDTTSYDNKEAYINFGGSSDHNHGHYYYQNNDHHEQKPAVLNGNSTSNNISPRSLTFCHFNTLSLKHHSLVLPSIALNFTNAKMLDRYSVALFLILSWLVVGLNASAGDANPRYRDCVKHCDETGCVGQRCFPNCKFSGAGLVTDLPWYMQEPLYLQWKKWDCQSDCQYYCMLDIEKEKELLNGVPVKYHGKWPFRRIYGMQEPASVAFSVLNLAAHFHGWVSFFILLYYKMPLKEGKKAYYEYASLWHIYGLLSMNSWLWSAVFHSRDVDLTEKLDYSSAVALLGYSLILAILRSFNVRDEATRVMISAPLIAFVTTHILFLNFYKLDYGWNMKVCVAMAVAQLIIWAVWAGFSHHPSGWKLWLVVFAGGIAMLLELYDFPPYQGLLDAHALWHATTIPLTYIWWSFIRDDTEFQTSNLLKKAK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0162 594 Pfam Per1-like family 322 581 IPR007217 GO:0006506
Dere08g0162 594 Pfam No apical meristem (NAM) protein 21 72 IPR003441 GO:0003677|GO:0006355
Dere08g0162 594 SUPERFAMILY NAC domain 20 132 IPR036093 GO:0003677|GO:0006355
Dere08g0162 594 PANTHER PER1-RELATED 260 589 IPR007217 GO:0006506
Dere08g0162 594 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
Dere08g0162 594 Gene3D NAC domain 76 135 IPR036093 GO:0003677|GO:0006355
Dere08g0162 594 Gene3D NAC domain 28 75 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0162 Dere-ChrDere08 3100155 3113410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0162 12 141 NAC Transcription Factor Family AT5G39820 36.649 1.04e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g0162 Per1 3.5e-88 CL0192