Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0160 ATGAAGGAGGGCGGTAGATCGAAGCAAGGTGCAATGTCGCCATGTGCAGCTTGCAAACTTCTGCGAAGAAGATGTGCTCAGGATTGTGTGTTTGCCCCTTATTTCCCAGCAGATGAACCCCAGAAATTTGCCAGTGTTCATAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAACTACCAGAGCACCAGCGTAGTGATGCAGTGAGTTCAATGGTGTACGAAGCAAACGCAAGGGTGAGGGACCCAGTGTATGGGTGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTGCTTCAAACACAACTCGCACTCGCACAAGCAGAAGTTGTGCACATGAGAATGACCCAATTCACATCACCATCTTCTTCCTCCCTCCCTGCACCTTCCCCTTCTTCTTCTGATCATCACCACTTGTCGCCATCTTCGTCCAGCAGGCTCAATGCCAAGTCCTTTTTTGCCATGGACATGGGAGAGTCCTTGTGGTCGTGCTAG 507 0.497 MKEGGRSKQGAMSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMTQFTSPSSSSLPAPSPSSSDHHHLSPSSSSRLNAKSFFAMDMGESLWSC 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0160 168 Coils Coil 93 113 - -
Dere08g0160 168 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Dere08g0160 168 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Dere08g0160 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 144 - -
Dere08g0160 168 MobiDBLite consensus disorder prediction 123 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0160 Dere-ChrDere08 3043307 3047076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0160 1 168 AS2 family AT1G31320 69.492 1.54e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere08g0160 LOB 1.1e-43 No_clan