Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0154 ATGATGTCGATGCTCAGAAGAAAAAAAATCATCAAGTTTTTCTCAAGTGCTCAAATTTCCCAATTAGTTTCTCATGAGTTCGGTGTGATTTCGCGATCAATGCAATCTTCTCCATACTCTTTGGCTTCTCTCAAAACCCTGAACCCTTTTAGGGTTTTGCTTTACTATGTATCGTATTCGACGCAAGCGTCCAAATTTCCCGAGTATGAGATGCCTTCTGTTACCTGGGGTGTGATTCAGGGACGGAAAGAGAAGCTTGTCTCACGGGTAATCATATTTGATTACCTAAAGGGTTTAGGAATTATCCCTGATGAATTGCATGACTTGGAGCTTCCTTCCGCCGTTGAGGTCATGAGAGAGCGCGTTGAGTTTCTTCAGAAGTTGGGTTTAACGATTGATGACATTAATGAGTATCCTTTAATGCTGGGATGCAGTGTGAGAAAGAATATGATACCTGTATTGGGGTACTTAGAAAAAATTGGGATTCCAAGGTCGAAGCTTGGTGAATTCATTAAAATGTACCCACAAGTTTTTCATGCTAGTGTGATTGTCGAGCTTGCTCCAGTTGTTAAGTTCCTAAGAGGACTTGATGTGGAAAGACAGGACATTGGGTTTGTGCTGCAAAAGTATCCTGAGCTTTTGGGGTTCAAGCTCGAGGGTACAATGAGTACTTCAGTCGCTTATCTTGTTAGTATTGGTGTCAATCCCCGAGATATTGGTCCCATGGTGACGCAGTATCCTTATCTTTTGGGAATGAGAGTTGGAACTATGATTAAACCTCTGATTGACTACTTGATCTCTTTGGGGCTACCAAAGAAAATTATGGCTAGAATGTTGGAAAAGAGACCCTATTTACTTGGTTATGATCTTAAGGAGACTGTTAAACCTAATGTGGATTCTCTGATTAGTTTTGGCATTAGAAAGGAATCTCTGCCTTTAGTTATTGCTCAATATCCACAGATCCTTGGGCTGCCTCTCAAGGCTAAATTGTCTTCACAGCAGTACTTCTTCAGTTTGAAGCTTAAGATTGATCCTGAAGGTTTTGCACGAGTGGTAGAGAAGATGCCGCAGGTGGTTAGCCTAAATCAACACGTGATAATGAAACCAGTTGAGTTCCTTCTCGCAAGGGCAATACCATCACATGACGTGGCTAATATGGTGATCAAAAGTCCTCAGTTAGTAGCATCAAGAGTTGAGCTCATGAAGAACAGTTTTTACTTCTTCAAGAGTGAGATGGGGAGACCTATAAAAGAGCTTGTGGACTTCCCAGAATACTTTACATATAGTTTGGAATCCCGGATCAAACCCAGATACCAGAGATTAAAAAGCAAGGGGATAAGGTTTTCATTAAATTGGATGCTAAATTGTAGTGACCAGAGATTTGAAGAAAGATTGCAGGGTAATTACATTGAAACTGAAACTCTAGGTCCATCATTCTGTATGGGTGGAAAGTTAGAGCTACCAGGTACTGAGATAATGTCAGATGAGGAAGAGGAGAGTGATGATGAAGTACTATATAGACGGACTGTTTCTCTCTAG 1539 0.4087 MMSMLRRKKIIKFFSSAQISQLVSHEFGVISRSMQSSPYSLASLKTLNPFRVLLYYVSYSTQASKFPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSAVEVMRERVEFLQKLGLTIDDINEYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGEFIKMYPQVFHASVIVELAPVVKFLRGLDVERQDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTMIKPLIDYLISLGLPKKIMARMLEKRPYLLGYDLKETVKPNVDSLISFGIRKESLPLVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLNQHVIMKPVEFLLARAIPSHDVANMVIKSPQLVASRVELMKNSFYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLKSKGIRFSLNWMLNCSDQRFEERLQGNYIETETLGPSFCMGGKLELPGTEIMSDEEEESDDEVLYRRTVSL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0154 512 PANTHER CGI-12 PROTEIN-RELATED 153 466 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 416 447 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 349 379 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 312 344 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 168 199 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 SMART mt_12 106 131 IPR003690 GO:0003690|GO:0006355
Dere08g0154 512 FunFam Transcription termination factor MTERF4, chloroplastic 256 470 - -
Dere08g0154 512 Gene3D Transcription termination factor 3, mitochondrial 118 257 IPR038538 -
Dere08g0154 512 Gene3D Transcription termination factor 3, mitochondrial 258 472 IPR038538 -
Dere08g0154 512 FunFam Transcription termination factor mterf4, chloroplastic 118 255 - -
Dere08g0154 512 Pfam mTERF 154 462 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0154 Dere-ChrDere08 2964031 2965569 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere08g0154 mTERF 3.7e-103 No_clan