Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0147 ATGGGAAAAGGAAGAGCCCCATGCTGTGATAAGAACAAAGTGAAGAGAGGCCCTTGGAGCCCTGAAGAAGACCTCAAGCTCATCACCTTCATCCAAAAACATGGCCATCAGAATTGGCGTTCTCTCCCCAAACAAGCAGTGTACATGTCACTTGTATATGCAAATCTTCTTCTGCTTCAGATTTCAGACCGCTTTCTGTGGTCAAAGATTGCGTCCCATTTGCCTGGCAGAACAGACAACGAAATCAAGAATGTGTGGAACACCCACTTAAAGAAGAAACTCTTCAACAAGACTTCTGATCATAGTGATGAATCCAAGCATGAATCTTCATCCATCACCTCCTCCTCCTCCTCTTCATCTTCCTCAGACGAAAATCAAGCACTGACACCATTAATGGCACAGAAAACAAACAATAGTAATGAGCAAAACTCCGACAATCATCAAGTGTCCGACATTAAAGACTTCTCACCAACTTCATTTTATTCCATTGAATCAGCAACACCTATCCTACAAGATGATCAGGAACTAATCACACCAGTTTCTCCATTATTCAACTGTATGTTTGTAAACGAGGTTGTTGATAAGCCAATTAAGAGTAGTAGTAGTAGTGTTGGATTGCTTGAAATACCGTTCGAGGCAGACTATGATTTTTGGAACATGTTGGACGATGATAACATAGGAGGATCTTTCGTGTCGAATGATCAAGTTCATGAAGATGCTGAAACTAGGAAGTGGATTATCGAACTGGAGAAAGAGCTTGGATTGGAACCCCAGGCATTTATTGATCATTTGGAGAAGACGCCGACGACGACGAAAGAACCCCGTATAGACATATGGCCTTCTTGGCTAGATAATTCTGGTTTCTGA 867 0.4198 MGKGRAPCCDKNKVKRGPWSPEEDLKLITFIQKHGHQNWRSLPKQAVYMSLVYANLLLLQISDRFLWSKIASHLPGRTDNEIKNVWNTHLKKKLFNKTSDHSDESKHESSSITSSSSSSSSSDENQALTPLMAQKTNNSNEQNSDNHQVSDIKDFSPTSFYSIESATPILQDDQELITPVSPLFNCMFVNEVVDKPIKSSSSSVGLLEIPFEADYDFWNMLDDDNIGGSFVSNDQVHEDAETRKWIIELEKELGLEPQAFIDHLEKTPTTTKEPRIDIWPSWLDNSGF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0147 288 CDD SANT 18 90 IPR001005 -
Dere08g0147 288 Pfam Myb-like DNA-binding domain 16 44 IPR001005 -
Dere08g0147 288 Pfam Myb-like DNA-binding domain 67 90 IPR001005 -
Dere08g0147 288 ProSiteProfiles Myb-like domain profile. 11 90 IPR001005 -
Dere08g0147 288 MobiDBLite consensus disorder prediction 97 126 - -
Dere08g0147 288 Gene3D - 13 95 - -
Dere08g0147 288 SUPERFAMILY Homeodomain-like 14 86 IPR009057 -
Dere08g0147 288 SMART sant 15 92 IPR001005 -
Dere08g0147 288 MobiDBLite consensus disorder prediction 109 126 - -
Dere08g0147 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 94 IPR017930 -
Dere08g0147 288 PANTHER OS09G0431300 PROTEIN 60 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0147 Dere-ChrDere08 2855018 2857572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0147 1 256 MYB Transcription Factor Family AT1G79180 36.061 3.83e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g0147 Myb_DNA-binding 1.4e-05 CL0123