Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0140 ATGTGTTATAGCTTAGGCATTATGTTTGATTCTGTTGGAAAAGATGTTATTGGGCTAGCACAAACCGGTTCTGGTAAGACTGGTGCATTTGTTTTTCCCATACTGTATGCCCTTTTAGAAGCACCATGGCCGAAAGATTTTTTTGCTTATGTTTTGTCTCCCATAAGAGAGCTTGCTATTCAAATCTCTGAGCAATTTGAAGCTTTAGGTGTTGAAACTGGTGTCAAGTGTGCTGTGTTGGAGGAATTTGACATGGTGCAACAGTCTATCAAAATTGCAAAGCAGCCTCATATTATTGTAAGTCTTACTGCTGCTGTAGACATGCTTATAATTTCATTGGTTTTTCAAGCTCCTGTCTTGGATGAGGCTGACAGGCTGTTGAATGAGGATTTTAAGGAATCTCTCAATGAGATTCTACAAACTGTCCCTCAACAGCGAAGAACATTTTTGTTTTCTACTACAATGACTAAGAAGGTCCAGAAACTCCAACAGGTTTGTTTGAGGAATCCTGTAAAGATTGAAGCAGCATCTAAATATTCTACTGTTGACACACTGAAGCAACATTTTTGCTTTTTGCCTGCTAATCACAAGAGACTTGGTGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATCCTTATTTGTACTGACATGGCAAGTAGAGGTTTGGACATTCCTACAGTAGATGTGGTTATCAACTATGATATCCCTGCAAACTCCAAGATAGAGAAGCTAATAGGTAAGAAGTTACCAAAGTATCCTGCACAAGAAGAGGAAGTTCTACTTCTGAAAGAGCCTGTTAACGAGTCCAAAAGCTTATCAGTAATGAAAATGAAGGAGAATGGAGGGAAGAAGAGACGGAAGGCAGGAGATAATGAAGTGGAGGATATTGAGAAATATTTAGGTCTCAAGGATGGAAAATCATCCAAAAAGTTCAAAAGGAAATGA 948 0.3871 MCYSLGIMFDSVGKDVIGLAQTGSGKTGAFVFPILYALLEAPWPKDFFAYVLSPIRELAIQISEQFEALGVETGVKCAVLEEFDMVQQSIKIAKQPHIIVSLTAAVDMLIISLVFQAPVLDEADRLLNEDFKESLNEILQTVPQQRRTFLFSTTMTKKVQKLQQVCLRNPVKIEAASKYSTVDTLKQHFCFLPANHKRLGALNKFKSGDCNILICTDMASRGLDIPTVDVVINYDIPANSKIEKLIGKKLPKYPAQEEEVLLLKEPVNESKSLSVMKMKENGGKKRRKAGDNEVEDIEKYLGLKDGKSSKKFKRK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0140 315 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 134 302 IPR001650 -
Dere08g0140 315 Gene3D - 5 176 IPR027417 -
Dere08g0140 315 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 119 127 IPR000629 -
Dere08g0140 315 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 197 241 - -
Dere08g0140 315 SMART ultradead3 2 188 IPR014001 -
Dere08g0140 315 SMART helicmild6 179 241 IPR001650 -
Dere08g0140 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 238 IPR027417 -
Dere08g0140 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 173 IPR027417 -
Dere08g0140 315 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 7 173 IPR014001 -
Dere08g0140 315 Pfam DEAD/DEAH box helicase 13 162 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0140 Dere-ChrDere08 2807250 2815385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0140 13 242 Eukaryotic Initiation Factors Gene Family AT3G19760 23.611 5.77e-21 90.9