Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0135 ATGGCGTCCTCTCTTCTTACAAGGATGTTTTTGGGTCCTCGCCTCATTCACTCTTCGAGGCCCCAAATTCTCACTTCCTTCTTCAATAAGAGTTCATTTTCTTCACAAGCTGTCCCAGCCTATACTGCTCAAAAAACAAAAACAACTCCCTGGGCTCCTTTTGTCATGGCTTCTTCTGCAATTGGGACAAGAGCTTCTTATTCAACACTGTCTATATCTACAGATGAGCCTGTTGTTTCTGTGGATTGGCTCTATGCTAATTTAAAGAATCCTGATATGAAGGTGCTGGATGCCTCTTGGTACATGCCAGATGAGCAGAGGAACCCAATTCAAGAATATCAGGTGGCTCACATTCCAGGGGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGAACCACAAATTTGCCGCACATGTTGCCATCAGAAGAAGCTTTTGCTGCTGCAGCTTCTGCTCTTGGCATTGAGAACAAAGATGGGCTGGTTGTTTATGATGGAAAAGGATTATTTAGTGCAGCTCGTGTCTGGTGGATGTTTCGAGTCTTTGGGCATGACAGAGTTTGGGTATTAGATGGTGGACTGCCAAGATGGCGCGCATCGGGATATGATGTTGAATCTAGTGCTTCTGGTGATGCTATACTAAAGGCTAGTGCTGCAAGTGAGGCCATAGAGAAAGTATATCACGGACAAGCAGTTGGGCCAATCACATTTAAGACTAAATTTCAGCCACATCTTGTTTGGACCCTTGAGCAGGTAAAGAAAAATGTTGAGGAAAAAAGTCACCAACACATAGATGCTCGATCAAAGCCAAGGTTTGATGGAGCTGCACAAGAGCCTCGGAAGGGAATCAGAAGTGGTCATGTACCTGGCAGCAAGTGCATTCCTTTTGCCCAGTTGCTGGATGCTTCACAAACATTGTTACCACCAGCTGAGCTTAAGAAGCGATTTGATGAAGAAGGCATCTCTTTGGAAAGGCCAGTTGTGACTTCTTGTGGCACTGGTGTAACTGCTTGCATTCTTGCATTGGGTCTGCATCGTCTTGGAAAGTCTGATGTTGCAGTCTATGATGGATCTTGGACAGAATGGGGAGCGCATTCTGATACACCTGTTGAAACTTCTTAG 1122 0.4501 MASSLLTRMFLGPRLIHSSRPQILTSFFNKSSFSSQAVPAYTAQKTKTTPWAPFVMASSAIGTRASYSTLSISTDEPVVSVDWLYANLKNPDMKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGIADRTTNLPHMLPSEEAFAAAASALGIENKDGLVVYDGKGLFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYHGQAVGPITFKTKFQPHLVWTLEQVKKNVEEKSHQHIDARSKPRFDGAAQEPRKGIRSGHVPGSKCIPFAQLLDASQTLLPPAELKKRFDEEGISLERPVVTSCGTGVTACILALGLHRLGKSDVAVYDGSWTEWGAHSDTPVETS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0135 373 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 250 372 IPR036873 -
Dere08g0135 373 Gene3D - 71 212 IPR036873 -
Dere08g0135 373 CDD TST_Repeat_1 78 201 - -
Dere08g0135 373 ProSitePatterns Rhodanese signature 1. 113 124 IPR001307 GO:0004792
Dere08g0135 373 PANTHER THIOSULFATE SULFERTANSFERASE 75 372 IPR045078 GO:0016783
Dere08g0135 373 SMART rhod_4 247 368 IPR001763 -
Dere08g0135 373 SMART rhod_4 79 203 IPR001763 -
Dere08g0135 373 ProSiteProfiles Rhodanese domain profile. 257 371 IPR001763 -
Dere08g0135 373 ProSitePatterns Rhodanese C-terminal signature. 352 362 IPR001307 GO:0004792
Dere08g0135 373 Gene3D - 242 368 IPR036873 -
Dere08g0135 373 MobiDBLite consensus disorder prediction 259 287 - -
Dere08g0135 373 FunFam Sulfurtransferase 71 213 - -
Dere08g0135 373 FunFam Sulfurtransferase 242 373 - -
Dere08g0135 373 MobiDBLite consensus disorder prediction 259 280 - -
Dere08g0135 373 Pfam Rhodanese-like domain 80 199 IPR001763 -
Dere08g0135 373 Pfam Rhodanese-like domain 249 364 IPR001763 -
Dere08g0135 373 CDD TST_Repeat_2 248 364 - -
Dere08g0135 373 ProSiteProfiles Rhodanese domain profile. 89 206 IPR001763 -
Dere08g0135 373 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 76 207 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0135 Dere-ChrDere08 2743737 2752421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0135 56 372 Sulfurtransferasese or Rhodanese AT1G79230 77.918 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0135 08 2743737 2752421 Dere08g0135 08 2743737 2752421 ECH