Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0125 ATGGATCAATCGGAGCAGACGCAACAGCAACAGCAACAACAGCAGCATGTGGTAGGAGTTGCAGCAGGCACTGGCCAAATGACCTATTCTACTCATTACCAGACTGCTCCTATGGTAGCTTCTGGCGCAGCTGCTGTAGCTGTATCTTCCCCAGCACAGCCTCCTGCCCCCTTCTCAAACGCCCCTCATCAAATTGCATATCAGCAAGCGCACCATTTCCACCATCAACAGCAGCAGCAACAACAACAGCAGCTTCAGATTTTTTGGGCTAACCAAATGCAAGAAATTGAGCAAACAACTGACTTCAAGAACCATAGTCTCCCACTTGCTCGGATAAAAAAAATAATGAAAGCTGATGAGGATGTCCGCATGATTTCAGCAGAGGCCCCAGTCATATTTGCAAAAGCATGCGAAATGTTTATCCTGGAGTTGACTTTGAGATCTTGGATCCACACAGAAGAAAACAAGAGGAGAACACTACAGAAGAATGATATAGCAGCTGCTATTTCAAGGACTGACGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGAGTAACAAAAGGTACTATTCCAGTAGTGGGTTCTCCAGCTGATATTCCATATTATTATGTCCCACCACAGCATCCTGTAGGACCTACTGGGATGATCATGGGAAAACCAGTTGACCAAGCAGCAATATATGCTACCCAACAGCCTCGACCTCATATGGCTTTCATGCCATGGCCACAGACACAGCCTCAGCAACAGCCACCACCCGAACAGCTGCAAACAGACACTTGA 807 0.4597 MDQSEQTQQQQQQQQHVVGVAAGTGQMTYSTHYQTAPMVASGAAAVAVSSPAQPPAPFSNAPHQIAYQQAHHFHHQQQQQQQQQLQIFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPVVGSPADIPYYYVPPQHPVGPTGMIMGKPVDQAAIYATQQPRPHMAFMPWPQTQPQQQPPPEQLQTDT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0125 268 Gene3D Histone, subunit A 67 184 IPR009072 GO:0046982
Dere08g0125 268 MobiDBLite consensus disorder prediction 245 268 - -
Dere08g0125 268 FunFam Nuclear transcription factor Y subunit gamma 72 184 - -
Dere08g0125 268 SUPERFAMILY Histone-fold 63 178 IPR009072 GO:0046982
Dere08g0125 268 Pfam Core histone H2A/H2B/H3/H4 61 169 IPR007125 GO:0003677
Dere08g0125 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 55 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0125 Dere-ChrDere08 2669776 2670582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0125 85 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 93.077 1.13e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere08g0125 Histone 9.9e-18 CL0012