Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0123 ATGGACCAACAGAATCTCGTAGACCAAAACTTCCCACTCTTCTCCAGTTCCCGTAAACCCTCCAGAAACCTCACGCCAGCCGTCACAACCCCTGCCGCCGCTGCCGTCAAAGACCCTAACTTTGATACACAGCACCTCGGAAAATCGAAATATACTGTCCCCGACCCCACCAGTTCCACAACTTTCGCGGAGCTTGGACTCGACGAATGGGCAGTGAAGACGTGCAGGGAACTCGGGATGCGCAAGCCCCGGCGGGTCCAATCCCACTGCATCCCGAAGATTCTTGATGGATGCCATGTGCTCGGCATCGACGAGACAGGAAGCGGTAAGACTGCGGCATTTGCTTTGCCGATTCTTCACCGCCTGTCTGAGCATCCCTTTGGGGTTTACGCCTTGGTTGTGACGCCGACGAGAGAGTTGGCGTACCAGCTGGCGGAGCAATTTAGGGCATTGGGCTCGTGCTTGCATTTGCGGATAGCCGTGGTGGTTGGAGGAATGGATATGCTGAAACAAGCAAAGAGTTTGATGTCCAGACCGCATGTTGTGATTGCCACACCAGGGAGGATCAAGGTTTTGCTCGAGGATAATCCTGATATTCCTCCTGTTTTTTCTAGAACTAAGTTCCTGGTCTTGGATGAAGCCGATCGAGTTCTTGATGTTGGCTTTCAGGAGGAATTGAAATTCATCTTTCAGTGCTTACCAGAAAATCGGCAAAACTTATTTTTTTCTGCTACTACAACAAGTAATTTACAAAAGTTGCATGAGCGCTACCAAGATAAGCTTTATGTCTATGAGGCCTATGAGGGCTTGAAAACAGTTGAGACACTTAAGCAACAGGTTATATTTGTCCCCAAAAAGGTGAAGGAGGTTTATTTAATGCATATATTGTCCAACATGGAAGACATGGGCATTCGTTCTGCCATTGTCTTTATCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTTCTTGATCAAGAAGCTGCAGCTCTGTACTCATTTAAATCACAGACTCAGAGACTTGAAGCACTTCATCAATTTAAATCAGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGTGGTTTGGACATTCCTACAGTTGATCTAGTTATCAACTATGATGTTCCAAGGTTCCCAAGGGATTATGTTCATCGTGTAGGTCGTACTGCAAGAGCAGGTAGAGGAGGATTAGCGGTGAGCATTGTCACCCAGAATGACATTGATCTCATTCGTGAAGTAGAAGCTCTTCTTGAAAGGCAACTTGAATTGGTTGAATACAAAGAGAATGAGGCGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTGGCAGAAATGAAAATGTTGGATGATGGCTTTGAGGAGAAAGCAGAAGAGCGGAAAAAGCAGAAACTGAAAATGCTAGCAGAGAAAGGACTGTTAAAGAAAAGGAGCAGAAAGAGGAAAAGAAATAAAGGCCTTGGGGAGAAGAGAAAAGAACATAAAAAGGTAGTGGAAACATTATCAGATAAGGGGTCACAAAATGGAAAGAGTGAGAAGACGGAGTGA 1569 0.4538 MDQQNLVDQNFPLFSSSRKPSRNLTPAVTTPAAAAVKDPNFDTQHLGKSKYTVPDPTSSTTFAELGLDEWAVKTCRELGMRKPRRVQSHCIPKILDGCHVLGIDETGSGKTAAFALPILHRLSEHPFGVYALVVTPTRELAYQLAEQFRALGSCLHLRIAVVVGGMDMLKQAKSLMSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLHERYQDKLYVYEAYEGLKTVETLKQQVIFVPKKVKEVYLMHILSNMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDIDLIREVEALLERQLELVEYKENEALSLMKKVFSAKNVAEMKMLDDGFEEKAEERKKQKLKMLAEKGLLKKRSRKRKRNKGLGEKRKEHKKVVETLSDKGSQNGKSEKTE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0123 522 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 210 218 IPR000629 -
Dere08g0123 522 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 60 88 IPR014014 GO:0003724
Dere08g0123 522 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 55 506 - -
Dere08g0123 522 CDD DEADc_DDX49 62 265 - -
Dere08g0123 522 MobiDBLite consensus disorder prediction 480 497 - -
Dere08g0123 522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 91 264 IPR014001 -
Dere08g0123 522 SMART ultradead3 79 279 IPR014001 -
Dere08g0123 522 Pfam DEAD/DEAH box helicase 85 253 IPR011545 GO:0003676|GO:0005524
Dere08g0123 522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 438 IPR001650 -
Dere08g0123 522 SMART helicmild6 318 399 IPR001650 -
Dere08g0123 522 MobiDBLite consensus disorder prediction 1 31 - -
Dere08g0123 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 417 IPR027417 -
Dere08g0123 522 MobiDBLite consensus disorder prediction 475 522 - -
Dere08g0123 522 Gene3D - 264 437 IPR027417 -
Dere08g0123 522 CDD SF2_C_DEAD 276 408 - -
Dere08g0123 522 MobiDBLite consensus disorder prediction 1 28 - -
Dere08g0123 522 Gene3D - 35 263 IPR027417 -
Dere08g0123 522 Pfam Helicase conserved C-terminal domain 303 399 IPR001650 -
Dere08g0123 522 Coils Coil 416 436 - -
Dere08g0123 522 MobiDBLite consensus disorder prediction 498 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0123 Dere-ChrDere08 2648535 2653954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0123 32 412 Eukaryotic Initiation Factors Gene Family AT3G13920 30.730 2.30e-54 187