Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0104 ATGAGACCCGACGACGATGCCCGTCTCGCCTCAGCACCCCACTTCCTGCCAGACTTCCCCACATATCGACACTCACTCACCCTTTCCACTCTTTCTGTTGGCGTTATCTGCTCACACTTCCCTCGTTCGCTTCACCCTTGCCCCTCTTCTTATAGCCCTAACTCCAGACCTCCTATCATAGTTGTGAATTCTCTTAGTTCGTCAGTCAGTGGGTTATGTCAAAATGATGTTGGTTCTGACAAAGAATTACAGGTTCGGATTCAATTTAATAGTTACAAAAGGTTAGCACAAGTTGAAGTGTTCTTGGGGCCTTACCAGATAAGAGAGGTAAAGAAGGAGTTGCAGCATAAGATGAAACAAAAGAAGAAGAGGTTCCCTTGGTTTAGCTTGGACTTATTTCAAGAATATTTGGAGATGGAACAATCTGCTGGTGAGAGAAAGATGGTTGGTGGATTTTTGGTGTACGAAAGAAGAAGAGACGGCACTGATTCAGGGAGAAATGCATCTTTCCCTGGTGAAAAAAATTCTACACAAGAGTCATGCCCCAGTGAAAAGAATTCCTCACACTCTAGTGGGGCTAAAACAGATGACAAGAACCGTGAAATTGGAACAGATGGAAGTTACTTTCATTGTGTTCTGTGTGATGATGGAGGGGAGTTGCTCTGTTGTGACTTTTGCCCTCGTACTTTTCATCTTGACTGCCTCAATTACAAGTCTGTTCCGGAAGGAGAGTGGAAATGCCCAAACTGTTGTAACAATGAAGAGCGTTCAAATGAATTAATTAAAAATTTGAAGAATTCGGTTCCCAAAAAGAAGGTTGCATCTAAAAAAGGAAAGGTAGCTTCATCAGGAGAAGTTCCATGTATAGAAGTGGCAATAGTTCAAGAAGCAATTGTAGATAGGAAACCCATCTTTGCATATGCATGTGTGAGAGTTTTGTTACTTGCTAAGCTATCTGTCTTGTGTTGTCAATTCTTCATGACAGGCATGCTAGAGTAA 999 0.4224 MRPDDDARLASAPHFLPDFPTYRHSLTLSTLSVGVICSHFPRSLHPCPSSYSPNSRPPIIVVNSLSSSVSGLCQNDVGSDKELQVRIQFNSYKRLAQVEVFLGPYQIREVKKELQHKMKQKKKRFPWFSLDLFQEYLEMEQSAGERKMVGGFLVYERRRDGTDSGRNASFPGEKNSTQESCPSEKNSSHSSGAKTDDKNREIGTDGSYFHCVLCDDGGELLCCDFCPRTFHLDCLNYKSVPEGEWKCPNCCNNEERSNELIKNLKNSVPKKKVASKKGKVASSGEVPCIEVAIVQEAIVDRKPIFAYACVRVLLLAKLSVLCCQFFMTGMLE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0104 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 294 IPR013083 -
Dere08g0104 332 PANTHER PHD FINGER PROTEIN 12 194 251 IPR042163 GO:0003714|GO:0045892
Dere08g0104 332 SUPERFAMILY FYVE/PHD zinc finger 205 256 IPR011011 -
Dere08g0104 332 CDD PHD2_CHD_II 211 250 - -
Dere08g0104 332 MobiDBLite consensus disorder prediction 168 189 - -
Dere08g0104 332 ProSitePatterns Zinc finger PHD-type signature. 211 250 IPR019786 -
Dere08g0104 332 ProSiteProfiles Zinc finger PHD-type profile. 208 253 IPR019787 -
Dere08g0104 332 SMART PHD_3 210 251 IPR001965 -
Dere08g0104 332 MobiDBLite consensus disorder prediction 160 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0104 Dere-ChrDere08 2475224 2482020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0104 211 250 PHD Transcription Factor Family AT1G05380 55.000 2.44e-12 66.2