Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0103 ATGATCAAATATGGAAGAAAGAAGAAGGAGGAAAGAAAGAAGCGGGGATGGAAAGAGAAGCGAATCGGAGAAAAACCCAAAAAGCGAAGTGCCGAAATGGCTCGCATACTGCCAGTTCTAGTTCGTCGTCGCAGGTCAGTTGATTTATGTATCGGTGAGATTGTATCTAATTCACGTCTTTTTTTGTCAGAGGCCAGTTTTCCAAGTAGTATGGAATACCCATGTAGGCTTACAAGTCTAGAGGCTTTCCCTTCTAACAGACACTATATGAATTTACGCAAAAGAAAATGCACTGTTCTTGGAAAAAACAAATCATTTTCCAATAAAGCCATATCCTTGAATTCATATAGCTCCAAGGCAAAAGCTGATGACAATCTAGGCATACCAACTCATGCTATAGGAAGGGATGGACATTTTTATGAGTGTATGAAGTGTGAAGATGTTGGGCAGTTGCTTTGCTGTGACACTTGTTCATGTACCTATCATCTCAATTGCCTTAATCCACCTCTCGAGTCGACTCCTGAAGGAGATTGGCACTGCCCGAACTGCTCTGACAATGACAACCTTTCAAAGGCAACATCAAATCTTGGGAGTACTGATTCCAATAAAAGACGTACATGGAAGGAAGAAAGTAATTCCTCTTTCAGTTGTTCCTTGTGCTCAAAGATCAAGAAAATATTAATATTAAATGAAGATGAGGCTGTTATGCCAATACCCTGTTCAATTGATCAGCTCAACTCATCAGTTGGATTTGACAAATATGCACTGGAATACCGTGGAGGGCCTTCAGTTCCTGATGCTGGTATTAATGGTACCATTAACCAACAGACCCCCAACAACAATGGATGTGATAAACTTTTGATTCTTCGGGATGTTTTGCAGGAGGCAGTGCAGGGACTTGAGAACACAGCAAAGGCAAGACAGAAAGAAAAGCTCATTTTGAGGATCACTAGCAAGGGGGCTCGTCCAGTTTCAAAATTGGATCTACAAAGGCAAAGCAGTAATCCAGTAGCTGCTCAAACAAGCCAAGTTCAGAAAGATGAAAATGCAAGTCTTCATTCAAGACTGAAAGGAAAGCAGATTTTGAGGAGCACTAGCAAGGGGGCTTATTCGGGTTCAAAACTAGATGCACAAAAACAAAGCTCAGATCTCCAGATGGTCAAATATGGTGAAAGTGTTACATCAAATGCTTTAGCAAATGACGGAATAGGTGCAGATGCTCAGCGTTCATCTTTGATGACTCGGAGTGGCCAGACTACTACCATTCCAAATATTTCATTACCTAAAACGAATCCGTCAGCTGCTTCAGGTTTTACATCAAGCACGTCTTGCGTTAAAAATATTGACACGGTGCCATCAGGGAGACCTTATGGATTTCTCGAATACAATGCCATTAGCTGGTCGGCGTTGGAACTTGATGCTCTGTGGGTTGGTGTTCGTAGATATGGTCAGGAAGATTGGAACGCCATTTTGGCAGATCCATCTCTGAAAGTTCTGAAGAACAAAACCCCTCAAGATCTATCCCTGAGGTGGAAAGATGAGCTTCTAAAAATCCTCTCATTTCAAAAACCAACAAGCTCCTTGCCTTCTGCTGTACTTGCAGAGAGATCAAAACCAACAAAACTAGACATACAAGGTATGAAATTTAAAGATGCCACAACCATGCAGCTTCTCCCTCCAAAAGTTCCATTCCCTTCTCTGAAATATGGTAACTTGGGTTCTTATGACCAAGGATCTTCTTCCTCTAGAGCTTCTCCTTCGTTTCCAAGGGCTCGTGATATTGATAGTGTTCCTCCTCATTGGGTAACCAATTTGAACAATGAACCTGTGATTTCAGAGCTTCTGTTTCAGACCCTCAATCATAAGGCTAACCCAGATACCAAAATGAGGCTCATGGGAATGCAGGCATTTCCAACTCCAGGGGTAGCCATGGCTACACAGAGAAGGTCATCTTTTCATAAAACTGACCAGCCCAAACTATTCCTGGGTGGTTATTTCCCTATTTGCAAAGCATGTAGCAGGCCTAGCAATACTAAGCCAAATCCTTCTCAGGTGGGGTCAGATGAAGACTGA 2073 0.4226 MIKYGRKKKEERKKRGWKEKRIGEKPKKRSAEMARILPVLVRRRRSVDLCIGEIVSNSRLFLSEASFPSSMEYPCRLTSLEAFPSNRHYMNLRKRKCTVLGKNKSFSNKAISLNSYSSKAKADDNLGIPTHAIGRDGHFYECMKCEDVGQLLCCDTCSCTYHLNCLNPPLESTPEGDWHCPNCSDNDNLSKATSNLGSTDSNKRRTWKEESNSSFSCSLCSKIKKILILNEDEAVMPIPCSIDQLNSSVGFDKYALEYRGGPSVPDAGINGTINQQTPNNNGCDKLLILRDVLQEAVQGLENTAKARQKEKLILRITSKGARPVSKLDLQRQSSNPVAAQTSQVQKDENASLHSRLKGKQILRSTSKGAYSGSKLDAQKQSSDLQMVKYGESVTSNALANDGIGADAQRSSLMTRSGQTTTIPNISLPKTNPSAASGFTSSTSCVKNIDTVPSGRPYGFLEYNAISWSALELDALWVGVRRYGQEDWNAILADPSLKVLKNKTPQDLSLRWKDELLKILSFQKPTSSLPSAVLAERSKPTKLDIQGMKFKDATTMQLLPPKVPFPSLKYGNLGSYDQGSSSSRASPSFPRARDIDSVPPHWVTNLNNEPVISELLFQTLNHKANPDTKMRLMGMQAFPTPGVAMATQRRSSFHKTDQPKLFLGGYFPICKACSRPSNTKPNPSQVGSDED 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0103 690 CDD PHD2_CHD_II 142 183 - -
Dere08g0103 690 ProSiteProfiles Myb-like domain profile. 466 515 IPR001005 -
Dere08g0103 690 Coils Coil 290 310 - -
Dere08g0103 690 SUPERFAMILY FYVE/PHD zinc finger 136 187 IPR011011 -
Dere08g0103 690 MobiDBLite consensus disorder prediction 1 22 - -
Dere08g0103 690 MobiDBLite consensus disorder prediction 1 29 - -
Dere08g0103 690 ProSiteProfiles Zinc finger PHD-type profile. 139 186 IPR019787 -
Dere08g0103 690 PANTHER PHD FINGER PROTEIN 12 125 680 IPR042163 GO:0003714|GO:0045892
Dere08g0103 690 SUPERFAMILY Homeodomain-like 465 516 IPR009057 -
Dere08g0103 690 ProSitePatterns Zinc finger PHD-type signature. 142 183 IPR019786 -
Dere08g0103 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 186 IPR013083 -
Dere08g0103 690 SMART PHD_3 141 184 IPR001965 -
Dere08g0103 690 MobiDBLite consensus disorder prediction 325 363 - -
Dere08g0103 690 MobiDBLite consensus disorder prediction 327 349 - -
Dere08g0103 690 CDD SANT_TRF 467 512 - -
Dere08g0103 690 Gene3D - 466 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0103 Dere-ChrDere08 2463035 2471374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0103 142 234 PHD Transcription Factor Family AT1G05380 40.860 1.69e-11 65.9