Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0093 ATGGCTCTAACTACTCTTCCTTCCTTGCTTCCTTCATTCTGGGCAATTCTAGGGCTCTCCCAGTACATTGAGTGTGCAATTTTTGAAGTGAGCCATTGTAAGAAGCAGAGGCTACTTGAGAATGAGAAGTGGCATTCTTCTCCTTTATCTGACTCTGGCAGTTATTTCTCTCACTCATTGTGGATTGACCCTATTTGCATTTCTTTCCTGTTTTCTCTAGCAAAAGAAATGGGGAAATTGCAGTTGCTGCATCATCCTCCTATTATTCCCAAATTTCAGATTTATACCAAAATGCGTTTCTTGCATAAATGGGTTCTATTTGGAGATGCAGAGAGATCAATGAGGCTATTGAAAGGCCAAAAGCATGGGAGAATTCTGGCACACAAGCACACAAAGAAGTTGAGAAAGATTTTCAAGCATTTTGATCTTACTTCATCTTTGGAGTCTTCAAATGTACAGGCCTATAGTGTTGGCTCATCGTCCCCTTTGCCACCTTATGAATCACTAGCCCCAACTTCATTGCCAGAAAGAAGCCCTCCATTTTGTTTATATCCTCCTGGCTCCCCTTCCACAAGCAATCCAACTCCCACTATCAATCAGTTACCGCCACCAGTCCTTCCGGCCCAAAGCCCACCTCCAACCTCACCTGGTTCTCGGCCCACACCAACACCAGAAAGTGTTCCAAGCCCATTTGATAACATCCCAAACTCACCGTTACAAAATCCTCCAATTATCGTTCCTGGTCCCCCTGGATCTTTGCCCACACCAACACCAGAAAGTATTCCAAGCCCATCTGATAACATCCCGGGCTCACCGTTACAAAATCCTCCTATTATCATTCCAGGTACCCCTGGATCTTTGCCCACACCAACACCAGAAAGTATTCCAAGCCCACCTAATAATATTCCGGGCACGCCCAAACCCATACAAAATCCTCCTATCATTATTCCAGGCCCACCTGGGTCCACAACGAGCCCGCCAAGTACAATTCCATCCCCGAGTGGAGGTACTATTCCGGGCTCCCCTGAGCCCATACAAAATCCCCCTATCATTCTTCCAGGCCCACCTGGGTCAGCAACAAGCCCACCAAGTACTGTCCCAACCCCTACCGAAGGTACTGTCCCAAGCCCAATAGTGTATGAGCCTCCTGTTGTGTTTCCACCACCTAGTGTACCTCCTCCTCCGTACCCCATTGCCCCAAGTGGAGCCTTATGGTGTGTGGCTAAGCCATCAGTCCCAGACCCAATCATTCAGGAAGCCATGAATTATGCTTGTGGGTCAGGAGCAGATTGTGATTCCATTCGGCCCAATGGGCCTTGCTTTGAGCCTGCCACCGTTTTGGCACATGCCTCATATGCTTTCAATAGTTACTGGCAAAGTACCAAGGCTGCTGGTGGTACCTGTGACTTTGGAGGGACTGGCATGCTAGTTTCAGTTGACCCCAGCTACGATGGATGCCACTTTGTCTACAGTTGA 1476 0.479 MALTTLPSLLPSFWAILGLSQYIECAIFEVSHCKKQRLLENEKWHSSPLSDSGSYFSHSLWIDPICISFLFSLAKEMGKLQLLHHPPIIPKFQIYTKMRFLHKWVLFGDAERSMRLLKGQKHGRILAHKHTKKLRKIFKHFDLTSSLESSNVQAYSVGSSSPLPPYESLAPTSLPERSPPFCLYPPGSPSTSNPTPTINQLPPPVLPAQSPPPTSPGSRPTPTPESVPSPFDNIPNSPLQNPPIIVPGPPGSLPTPTPESIPSPSDNIPGSPLQNPPIIIPGTPGSLPTPTPESIPSPPNNIPGTPKPIQNPPIIIPGPPGSTTSPPSTIPSPSGGTIPGSPEPIQNPPIILPGPPGSATSPPSTVPTPTEGTVPSPIVYEPPVVFPPPSVPPPPYPIAPSGALWCVAKPSVPDPIIQEAMNYACGSGADCDSIRPNGPCFEPATVLAHASYAFNSYWQSTKAAGGTCDFGGTGMLVSVDPSYDGCHFVYS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0093 491 Pfam X8 domain 404 475 IPR012946 -
Dere08g0093 491 PRINTS Proline rich extensin signature 272 297 - -
Dere08g0093 491 PRINTS Proline rich extensin signature 222 238 - -
Dere08g0093 491 PRINTS Proline rich extensin signature 246 263 - -
Dere08g0093 491 PRINTS Proline rich extensin signature 191 212 - -
Dere08g0093 491 PRINTS Proline rich extensin signature 168 180 - -
Dere08g0093 491 MobiDBLite consensus disorder prediction 178 327 - -
Dere08g0093 491 FunFam Glucan endo-1,3-beta-glucosidase 4 399 491 - -
Dere08g0093 491 PANTHER BETA-1,3 GLUCANASE 400 488 IPR044788 -
Dere08g0093 491 Gene3D - 400 489 - -
Dere08g0093 491 MobiDBLite consensus disorder prediction 156 375 - -
Dere08g0093 491 SMART X8_cls 404 488 IPR012946 -
Dere08g0093 491 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0093 Dere-ChrDere08 2247645 2249869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0093 403 488 Glycoside Hydrolase AT3G13560 47.126 2.54e-22 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0093 08 2247645 2249869 Dere08g0093 08 2247645 2249869 ECH